(Circular) (Six-base) MAPSORT of: pFN21AB7913.seq Check: 8682 from: 1 to: 5188 pFN21AB7913 5188 bp With 182 enzymes: SgfI * April 15, 2010 09:28 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2998 278 Size: 53 83 186 936 1462 2468 Fragments arranged by size: 2468 1462 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2531 1937 Size: 594 4594 Acc65I G'GTAC_C Cuts at: 2509 2509 Size: 5188 AclI AA'CG_TT Cuts at: 1563 3315 3688 1563 Size: 1752 373 3063 Fragments arranged by size: 3063 1752 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2424 3251 4635 4903 1632 Size: 792 827 1384 268 1917 Fragments arranged by size: 1917 1384 827 792 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 4991 AflIII A'CryG_T Cuts at: 1203 2379 4087 5064 1203 Size: 1176 1708 977 1327 Fragments arranged by size: 1708 1327 1176 977 AgeI A'CCGG_T Cuts at: 4019 4019 Size: 5188 AhdI GACnn_n'nnGTC Cuts at: 3917 3917 Size: 5188 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5188 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5188 AlwNI CAG_nnn'CTG Cuts at: 2931 4503 2931 Size: 1572 3616 ApaLI G'TGCA_C Cuts at: 3245 4401 3245 Size: 1156 4032 ApoI r'AATT_y Cuts at: 1493 2497 2723 2875 4984 1493 Size: 1004 226 152 2109 1697 Fragments arranged by size: 2109 1697 1004 226 152 AseI AT'TA_AT Cuts at: 160 1032 3742 160 Size: 872 2710 1606 Fragments arranged by size: 2710 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5188 AvaI C'yCGr_G Cuts at: 1870 1943 2513 1870 Size: 73 570 4545 Fragments arranged by size: 4545 570 73 BamHI G'GATC_C Cuts at: 2215 2385 2518 2885 2215 Size: 170 133 367 4518 Fragments arranged by size: 4518 367 170 133 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2509 3964 618 Size: 325 217 627 722 1455 1842 Fragments arranged by size: 1842 1455 722 627 325 217 BanII G_rGCy'C Cuts at: 1391 2507 1391 Size: 1116 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4217 BbvCI CC'TCA_GC Cuts at: 2023 2023 Size: 5188 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3379 3413 1903 Size: 34 1442 34 3678 Fragments arranged by size: 3678 1442 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3080 4290 3080 Size: 1210 3978 BclI T'GATC_A Cuts at: 1548 1548 Size: 5188 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3799 136 Size: 107 122 71 631 605 2127 1525 Fragments arranged by size: 2127 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5183 5183 Size: 5188 BlpI GC'TnA_GC Cuts at: 2605 2605 Size: 5188 Bme1580I G_kGCm'C Cuts at: 1790 3249 4405 1790 Size: 1459 1156 2573 Fragments arranged by size: 2573 1459 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5188 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2919 3877 442 Size: 416 53 83 399 24 1502 958 1753 Fragments arranged by size: 1753 1502 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5188 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2357 3848 1239 Size: 1118 1491 2579 Fragments arranged by size: 2579 1491 1118 Bpu10I CC'TnA_GC Cuts at: 2023 2023 Size: 5188 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3313 4178 4476 3313 Size: 865 298 4025 Fragments arranged by size: 4025 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3851 882 Size: 617 2352 2219 Fragments arranged by size: 2352 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2979 493 Size: 711 1775 2702 Fragments arranged by size: 2702 1775 711 BsaBI GATnn'nnATC Cuts at: 5182 5182 Size: 5188 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2995 3377 4012 275 Size: 53 83 186 936 1462 382 635 1451 Fragments arranged by size: 1462 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2062 2469 3621 4019 4293 4440 4851 2062 Size: 407 1152 398 274 147 411 2399 Fragments arranged by size: 2399 1152 411 407 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 4963 Fragments arranged by size: 4963 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2261 1186 Size: 1075 4113 BseYI C'CCAG_C Cuts at: 4391 4887 4391 Size: 496 4692 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4615 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2638 3399 4427 1540 Size: 275 186 637 761 1028 2301 Fragments arranged by size: 2301 1028 761 637 275 186 BsiHKAI G_wGCw'C Cuts at: 3249 3334 4405 3249 Size: 85 1071 4032 Fragments arranged by size: 4032 1071 85 BsmI GAATG_Cn' Cuts at: 2699 2792 2699 Size: 93 5095 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2507 3249 3334 4405 1391 Size: 399 717 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 717 399 85 BspEI T'CCGG_A Cuts at: 2469 4851 2469 Size: 2382 2806 BspHI T'CATG_A Cuts at: 3077 4807 3077 Size: 1730 3458 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2543 844 Size: 1699 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3075 1394 Size: 429 1252 3507 Fragments arranged by size: 3507 1252 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3683 3857 65 Size: 1183 2435 174 1396 Fragments arranged by size: 2435 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3832 4019 1700 Size: 110 2022 187 2869 Fragments arranged by size: 2869 2022 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5188 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5188 BssSI C'ACGA_G Cuts at: 3248 4260 3248 Size: 1012 4176 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5188 BstBI TT'CG_AA Cuts at: 3992 3992 Size: 5188 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5188 BstYI r'GATC_y Cuts at: 1972 2215 2385 2518 2885 3270 3287 4739 4825 Size: 243 170 133 367 385 17 1452 86 Cuts at: 4825 4837 5183 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 385 367 346 243 170 133 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2094 513 Size: 552 1029 3607 Fragments arranged by size: 3607 1029 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2303 487 Size: 683 56 1077 3372 Fragments arranged by size: 3372 1077 683 56 BtsI GCAGTG_nn' Cuts at: 2118 2704 3498 3518 2118 Size: 586 794 20 3788 Fragments arranged by size: 3788 794 586 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5188 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5153 DraI TTT'AAA Cuts at: 2492 2492 Size: 5188 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4195 809 Size: 507 2879 1802 Fragments arranged by size: 2879 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2097 2635 3524 Size: 54 1425 50 275 18 267 538 889 Cuts at: 3524 5153 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 538 275 267 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2635 1537 Size: 275 823 4090 Fragments arranged by size: 4090 823 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3118 1353 Size: 1765 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3775 4149 4295 387 Size: 1064 138 2186 374 146 1280 Fragments arranged by size: 2186 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2357 2424 3251 3848 4635 4903 1239 Size: 393 725 67 827 597 787 268 1524 Fragments arranged by size: 1524 827 787 725 597 393 268 67 EcoNI CCTnn'n_nnAGG Cuts at: 2085 2139 2085 Size: 54 5134 EcoRI G'AATT_C Cuts at: 2497 2875 2497 Size: 378 4810 FspI TGC'GCA Cuts at: 3694 3694 Size: 5188 HaeII r_GCGC'y Cuts at: 1678 2371 4335 1678 Size: 693 1964 2531 Fragments arranged by size: 2531 1964 693 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3829 3861 3903 3935 1373 Size: 32 135 32 2257 32 42 32 2626 Fragments arranged by size: 2626 2257 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2532 2778 669 Size: 988 281 594 246 3079 Fragments arranged by size: 3079 988 594 281 246 HindIII A'AGCT_T Cuts at: 748 2427 748 Size: 1679 3509 HpaI GTT'AAC Cuts at: 2778 2778 Size: 5188 KpnI G_GTAC'C Cuts at: 2513 2513 Size: 5188 MfeI C'AATT_G Cuts at: 2787 2787 Size: 5188 MluI A'CGCG_T Cuts at: 5064 5064 Size: 5188 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2211 2437 4302 4486 1305 Size: 906 226 1865 184 2007 Fragments arranged by size: 2007 1865 906 226 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2099 10 Size: 54 1425 343 267 3099 Fragments arranged by size: 3099 1425 343 267 54 MslI CAynn'nnrTG Cuts at: 518 1166 3146 3505 3664 518 Size: 648 1980 359 159 2042 Fragments arranged by size: 2042 1980 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2356 2604 3281 4429 4674 1606 Size: 750 248 677 1148 245 2120 Fragments arranged by size: 2120 1148 750 677 248 245 NcoI C'CATG_G Cuts at: 513 1065 2094 513 Size: 552 1029 3607 Fragments arranged by size: 3607 1029 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5188 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5188 NotI GC'GGCC_GC Cuts at: 2635 2635 Size: 5188 NspI r_CATG'y Cuts at: 1132 1229 2383 2546 4091 1132 Size: 97 1154 163 1545 2229 Fragments arranged by size: 2229 1545 1154 163 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5188 PciI A'CATG_T Cuts at: 2379 4087 2379 Size: 1708 3480 PflMI CCAn_nnn'nTGG Cuts at: 1108 2396 1108 Size: 1288 3900 PmeI GTTT'AAAC Cuts at: 2492 2492 Size: 5188 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3257 3289 4770 4802 3257 Size: 32 1481 32 3643 Fragments arranged by size: 3643 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5188 PsiI TTA'TAA Cuts at: 2758 2758 Size: 5188 PstI C_TGCA'G Cuts at: 830 2113 2262 2540 830 Size: 1283 149 278 3478 Fragments arranged by size: 3478 1283 278 149 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5188 PvuII CAG'CTG Cuts at: 2356 2356 Size: 5188 SalI G'TCGA_C Cuts at: 1936 2530 1936 Size: 594 4594 SbfI CC_TGCA'GG Cuts at: 2540 2540 Size: 5188 ScaI AGT'ACT Cuts at: 2107 3436 5148 2107 Size: 1329 1712 2147 Fragments arranged by size: 2147 1712 1329 SfcI C'TryA_G Cuts at: 826 1045 2109 2258 2536 3671 4352 4543 826 Size: 219 1064 149 278 1135 681 191 1471 Fragments arranged by size: 1471 1135 1064 681 278 219 191 149 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5188 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5188 SmaI CCC'GGG Cuts at: 1872 2515 1872 Size: 643 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3292 4193 4455 820 Size: 197 926 1349 901 262 1553 Fragments arranged by size: 1553 1349 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 2979 493 Size: 2486 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5188 SphI G_CATG'C Cuts at: 1132 2546 1132 Size: 1414 3774 SspI AAT'ATT Cuts at: 5 52 3112 5 Size: 47 3060 2081 Fragments arranged by size: 3060 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5188 StyI C'CwwG_G Cuts at: 513 1065 2094 2627 513 Size: 552 1029 533 3074 Fragments arranged by size: 3074 1029 552 533 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3215 3232 3385 3570 4015 325 Size: 1255 1635 17 153 185 445 1498 Fragments arranged by size: 1635 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2105 3434 5146 Size: 274 80 33 51 1443 128 1329 1712 Cuts at: 5146 96 Size: 138 Fragments arranged by size: 1712 1443 1329 274 138 128 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5148 5180 5148 Size: 32 5156 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5188 XbaI T'CTAG_A Cuts at: 2524 2524 Size: 5188 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5188 XmaI C'CCGG_G Cuts at: 1870 2513 1870 Size: 643 4545 XmnI GAAnn'nnTTC Cuts at: 3317 3317 Size: 5188 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2996 276 Size: 53 83 186 936 1462 2468 Fragments arranged by size: 2468 1462 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI