Result of FASTA (omim) for pFN21AE5115
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5115, 106 aa
  1>>>pF1KE5115 106 - 106 aa - 106 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7848+/-0.000284; mu= 12.6301+/- 0.018
 mean_var=57.3758+/-11.516, 0's: 0 Z-trim(117.8): 21  B-trim: 124 in 1/53
 Lambda= 0.169321
 statistics sampled from 30072 (30093) to 30072 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.353), width:  16
 Scan time:  4.510

The best scores are:                                      opt bits E(85289)
NP_001230587 (OMIM: 600443) glutaredoxin-1 [Homo s ( 106)  707 180.0 6.4e-46
NP_001112362 (OMIM: 600443) glutaredoxin-1 [Homo s ( 106)  707 180.0 6.4e-46
NP_002055 (OMIM: 600443) glutaredoxin-1 [Homo sapi ( 106)  707 180.0 6.4e-46
NP_001230588 (OMIM: 600443) glutaredoxin-1 [Homo s ( 106)  707 180.0 6.4e-46
NP_001306220 (OMIM: 606820) glutaredoxin 2 isoform ( 124)  203 56.9 8.4e-09
XP_016856886 (OMIM: 606820) PREDICTED: glutaredoxi ( 124)  203 56.9 8.4e-09
NP_001230328 (OMIM: 606820) glutaredoxin 2 isoform ( 124)  203 56.9 8.4e-09
NP_932066 (OMIM: 606820) glutaredoxin 2 isoform 2  ( 164)  203 57.0 1.1e-08
NP_057150 (OMIM: 606820) glutaredoxin 2 isoform 1  ( 165)  203 57.0 1.1e-08
NP_001166984 (OMIM: 606235) thioredoxin reductase  ( 607)  194 55.1 1.4e-07
NP_443115 (OMIM: 606235) thioredoxin reductase 3 i ( 643)  194 55.1 1.5e-07
NP_057501 (OMIM: 205950,609588,616859,616860) glut ( 157)  160 46.4 1.5e-05


>>NP_001230587 (OMIM: 600443) glutaredoxin-1 [Homo sapie  (106 aa)
 initn: 707 init1: 707 opt: 707  Z-score: 945.4  bits: 180.0 E(85289): 6.4e-46
Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KE5 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY
               10        20        30        40        50        60

               70        80        90       100      
pF1KE5 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ
               70        80        90       100      

>>NP_001112362 (OMIM: 600443) glutaredoxin-1 [Homo sapie  (106 aa)
 initn: 707 init1: 707 opt: 707  Z-score: 945.4  bits: 180.0 E(85289): 6.4e-46
Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KE5 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY
               10        20        30        40        50        60

               70        80        90       100      
pF1KE5 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ
               70        80        90       100      

>>NP_002055 (OMIM: 600443) glutaredoxin-1 [Homo sapiens]  (106 aa)
 initn: 707 init1: 707 opt: 707  Z-score: 945.4  bits: 180.0 E(85289): 6.4e-46
Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KE5 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY
               10        20        30        40        50        60

               70        80        90       100      
pF1KE5 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ
               70        80        90       100      

>>NP_001230588 (OMIM: 600443) glutaredoxin-1 [Homo sapie  (106 aa)
 initn: 707 init1: 707 opt: 707  Z-score: 945.4  bits: 180.0 E(85289): 6.4e-46
Smith-Waterman score: 707; 100.0% identity (100.0% similar) in 106 aa overlap (1-106:1-106)

               10        20        30        40        50        60
pF1KE5 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY
               10        20        30        40        50        60

               70        80        90       100      
pF1KE5 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ
               70        80        90       100      

>>NP_001306220 (OMIM: 606820) glutaredoxin 2 isoform 3 [  (124 aa)
 initn: 196 init1: 133 opt: 203  Z-score: 279.0  bits: 56.9 E(85289): 8.4e-09
Smith-Waterman score: 203; 34.8% identity (68.5% similar) in 92 aa overlap (10-101:24-112)

                             10        20        30        40      
pF1KE5               MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFV
                              :. . ::.: : .: ::  :.... .. ..  ..:. 
NP_001 MESNTSSSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVEL-
               10        20        30        40        50          

         50        60        70        80        90       100      
pF1KE5 DITATNHTNEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ
       :.   .. :..:: : ..:: :::::.:..   ::: .:   :.. :.::  ..:     
NP_001 DLL--EYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKK
      60          70        80        90       100       110       

NP_001 SKRKEFQ
       120    

>>XP_016856886 (OMIM: 606820) PREDICTED: glutaredoxin 2   (124 aa)
 initn: 196 init1: 133 opt: 203  Z-score: 279.0  bits: 56.9 E(85289): 8.4e-09
Smith-Waterman score: 203; 34.8% identity (68.5% similar) in 92 aa overlap (10-101:24-112)

                             10        20        30        40      
pF1KE5               MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFV
                              :. . ::.: : .: ::  :.... .. ..  ..:. 
XP_016 MESNTSSSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVEL-
               10        20        30        40        50          

         50        60        70        80        90       100      
pF1KE5 DITATNHTNEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ
       :.   .. :..:: : ..:: :::::.:..   ::: .:   :.. :.::  ..:     
XP_016 DLL--EYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKK
      60          70        80        90       100       110       

XP_016 SKRKEFQ
       120    

>>NP_001230328 (OMIM: 606820) glutaredoxin 2 isoform 3 [  (124 aa)
 initn: 196 init1: 133 opt: 203  Z-score: 279.0  bits: 56.9 E(85289): 8.4e-09
Smith-Waterman score: 203; 34.8% identity (68.5% similar) in 92 aa overlap (10-101:24-112)

                             10        20        30        40      
pF1KE5               MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIKQGLLEFV
                              :. . ::.: : .: ::  :.... .. ..  ..:. 
NP_001 MESNTSSSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVEL-
               10        20        30        40        50          

         50        60        70        80        90       100      
pF1KE5 DITATNHTNEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ
       :.   .. :..:: : ..:: :::::.:..   ::: .:   :.. :.::  ..:     
NP_001 DLL--EYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKK
      60          70        80        90       100       110       

NP_001 SKRKEFQ
       120    

>>NP_932066 (OMIM: 606820) glutaredoxin 2 isoform 2 prec  (164 aa)
 initn: 196 init1: 133 opt: 203  Z-score: 277.2  bits: 57.0 E(85289): 1.1e-08
Smith-Waterman score: 203; 34.8% identity (68.5% similar) in 92 aa overlap (10-101:64-152)

                                    10        20        30         
pF1KE5                      MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIK
                                     :. . ::.: : .: ::  :.... .. ..
NP_932 AAAAASGMESNTSSSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVN
            40        50        60        70        80        90   

      40        50        60        70        80        90         
pF1KE5 QGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRL
         ..:. :.   .. :..:: : ..:: :::::.:..   ::: .:   :.. :.::  .
NP_932 YKVVEL-DLL--EYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV
            100         110       120       130       140       150

     100             
pF1KE5 KQIGALQ       
       .:            
NP_932 HQCYLKKSKRKEFQ
              160    

>>NP_057150 (OMIM: 606820) glutaredoxin 2 isoform 1 [Hom  (165 aa)
 initn: 196 init1: 133 opt: 203  Z-score: 277.2  bits: 57.0 E(85289): 1.1e-08
Smith-Waterman score: 203; 34.8% identity (68.5% similar) in 92 aa overlap (10-101:65-153)

                                    10        20        30         
pF1KE5                      MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIK
                                     :. . ::.: : .: ::  :.... .. ..
NP_057 TRSAARRMESNTSSSLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVN
           40        50        60        70        80        90    

      40        50        60        70        80        90         
pF1KE5 QGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRL
         ..:. :.   .. :..:: : ..:: :::::.:..   ::: .:   :.. :.::  .
NP_057 YKVVEL-DLL--EYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV
          100          110       120       130       140       150 

     100             
pF1KE5 KQIGALQ       
       .:            
NP_057 HQCYLKKSKRKEFQ
             160     

>>NP_001166984 (OMIM: 606235) thioredoxin reductase 3 is  (607 aa)
 initn: 203 init1: 113 opt: 194  Z-score: 257.1  bits: 55.1 E(85289): 1.4e-07
Smith-Waterman score: 194; 33.7% identity (70.7% similar) in 92 aa overlap (10-101:63-150)

                                    10        20        30         
pF1KE5                      MAQEFVNCKIQPGKVVVFIKPTCPYCRRAQEILSQLPIK
                                     :. ..::.: :  ::.  :..:..:.: ..
NP_001 PPGRRARLSSPGPSRSSEAREELRRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVE
             40        50        60        70        80        90  

      40        50        60        70        80        90         
pF1KE5 QGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRL
        ..::. ..   .   ..:. :...:. .::: .:..:  .:::..  .  ::: :: .:
NP_001 CNVLELDQV---DDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSG-LLQKL
            100          110       120       130       140         

     100                                                           
pF1KE5 KQIGALQ                                                     
        :                                                          
NP_001 LQEDLAYDYDLIIIGGGSGGLSCAKEAAILGKKVMVLDFVVPSPQGTSWGLGGTCVNVGC
      150       160       170       180       190       200        




106 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:29:09 2016 done: Mon Nov  7 21:29:09 2016
 Total Scan time:  4.510 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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