FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3635, 462 aa
  1>>>pF1KE3635 462 - 462 aa - 462 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2268+/-0.000344; mu= 17.7798+/- 0.021
 mean_var=61.7622+/-12.974, 0's: 0 Z-trim(113.2): 43  B-trim: 0 in 0/52
 Lambda= 0.163197
 statistics sampled from 22361 (22399) to 22361 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.263), width:  16
 Scan time:  8.580

The best scores are:                                      opt bits E(85289)
NP_001508 (OMIM: 601760) general transcription fac ( 462) 3049 726.6 3.4e-209


>>NP_001508 (OMIM: 601760) general transcription factor   (462 aa)
 initn: 3049 init1: 3049 opt: 3049  Z-score: 3876.7  bits: 726.6 E(85289): 3.4e-209
Smith-Waterman score: 3049; 100.0% identity (100.0% similar) in 462 aa overlap (1-462:1-462)

               10        20        30        40        50        60
pF1KE3 MESTPSRGLNRVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MESTPSRGLNRVHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRML
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 FLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPIFRQNLRI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSSGVSGAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSSGVSGAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 VHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGIT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 AQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFEL
              370       380       390       400       410       420

              430       440       450       460  
pF1KE3 LLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQKHSS
       ::::::::::::::::::::::::::::::::::::::::::
NP_001 LLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQKHSS
              430       440       450       460  




462 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:17:38 2016 done: Sun Nov  6 23:17:40 2016
 Total Scan time:  8.580 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]