FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5203, 220 aa
  1>>>pF1KE5203 220 - 220 aa - 220 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8338+/-0.000798; mu= 11.9298+/- 0.048
 mean_var=78.8494+/-15.341, 0's: 0 Z-trim(108.2): 11  B-trim: 9 in 1/51
 Lambda= 0.144436
 statistics sampled from 10040 (10044) to 10040 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.309), width:  16
 Scan time:  1.950

The best scores are:                                      opt bits E(32554)
CCDS12416.1 POP4 gene_id:10775|Hs108|chr19         ( 220) 1426 306.2 1.1e-83


>>CCDS12416.1 POP4 gene_id:10775|Hs108|chr19              (220 aa)
 initn: 1426 init1: 1426 opt: 1426  Z-score: 1616.2  bits: 306.2 E(32554): 1.1e-83
Smith-Waterman score: 1426; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)

               10        20        30        40        50        60
pF1KE5 MKSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MKSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FTRHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCSGLKPD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TQPQMIQAKLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TQPQMIQAKLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKEDRLKVIPKL
              130       140       150       160       170       180

              190       200       210       220
pF1KE5 NCVFTVETDGFISYIYGSKFQLRSSERSAKKFKAKGTIDL
       ::::::::::::::::::::::::::::::::::::::::
CCDS12 NCVFTVETDGFISYIYGSKFQLRSSERSAKKFKAKGTIDL
              190       200       210       220




220 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:29:03 2016 done: Mon Nov  7 22:29:04 2016
 Total Scan time:  1.950 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]