FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6122, 86 aa 1>>>pF1KE6122 86 - 86 aa - 86 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7864+/-0.000563; mu= 10.6051+/- 0.034 mean_var=53.7030+/-10.618, 0's: 0 Z-trim(111.9): 7 B-trim: 0 in 0/50 Lambda= 0.175015 statistics sampled from 12708 (12715) to 12708 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.391), width: 16 Scan time: 0.950 The best scores are: opt bits E(32554) CCDS12469.1 COX6B1 gene_id:1340|Hs108|chr19 ( 86) 632 166.6 1.8e-42 CCDS42630.1 COX6B2 gene_id:125965|Hs108|chr19 ( 88) 344 93.8 1.4e-20 >>CCDS12469.1 COX6B1 gene_id:1340|Hs108|chr19 (86 aa) initn: 632 init1: 632 opt: 632 Z-score: 876.2 bits: 166.6 E(32554): 1.8e-42 Smith-Waterman score: 632; 100.0% identity (100.0% similar) in 86 aa overlap (1-86:1-86) 10 20 30 40 50 60 pF1KE6 MAEDMETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MAEDMETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRV 10 20 30 40 50 60 70 80 pF1KE6 YQSLCPTSWVTDWDEQRAEGTFPGKI :::::::::::::::::::::::::: CCDS12 YQSLCPTSWVTDWDEQRAEGTFPGKI 70 80 >>CCDS42630.1 COX6B2 gene_id:125965|Hs108|chr19 (88 aa) initn: 341 init1: 341 opt: 344 Z-score: 483.0 bits: 93.8 E(32554): 1.4e-20 Smith-Waterman score: 344; 54.8% identity (75.0% similar) in 84 aa overlap (3-86:5-88) 10 20 30 40 50 pF1KE6 MAEDMETKIKNYKTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQ : .: ...: ::: :::.::: :::.::.::.::: :. : .: . . ::.: CCDS42 MLDVEAQEPPKGKWSTPPFDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYF 10 20 30 40 50 60 60 70 80 pF1KE6 RVYQSLCPTSWVTDWDEQRAEGTFPGKI :::.:::: ::: .:.:: .: : ::: CCDS42 RVYHSLCPISWVESWNEQIKNGIFAGKI 70 80 86 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:38:33 2016 done: Tue Nov 8 09:38:33 2016 Total Scan time: 0.950 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]