FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5110, 157 aa
  1>>>pF1KE5110 157 - 157 aa - 157 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1586+/-0.000847; mu= 9.7785+/- 0.051
 mean_var=104.8673+/-20.527, 0's: 0 Z-trim(109.9): 16  B-trim: 0 in 0/52
 Lambda= 0.125243
 statistics sampled from 11206 (11212) to 11206 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.344), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS33809.1 RPL24 gene_id:6152|Hs108|chr3          ( 157) 1015 193.0 6.6e-50


>>CCDS33809.1 RPL24 gene_id:6152|Hs108|chr3               (157 aa)
 initn: 1015 init1: 1015 opt: 1015  Z-score: 1009.5  bits: 193.0 E(32554): 6.6e-50
Smith-Waterman score: 1015; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1-157)

               10        20        30        40        50        60
pF1KE5 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQ
               70        80        90       100       110       120

              130       140       150       
pF1KE5 ASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR
       :::::::::::::::::::::::::::::::::::::
CCDS33 ASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR
              130       140       150       




157 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:25:46 2016 done: Mon Nov  7 21:25:46 2016
 Total Scan time:  1.810 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]