FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4514, 546 aa 1>>>pF1KE4514 546 - 546 aa - 546 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6574+/-0.000695; mu= 13.3369+/- 0.042 mean_var=119.7691+/-24.460, 0's: 0 Z-trim(113.6): 42 B-trim: 0 in 0/53 Lambda= 0.117193 statistics sampled from 14216 (14257) to 14216 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.438), width: 16 Scan time: 3.930 The best scores are: opt bits E(32554) CCDS8856.1 AAAS gene_id:8086|Hs108|chr12 ( 546) 3852 662.1 4.6e-190 CCDS53797.1 AAAS gene_id:8086|Hs108|chr12 ( 513) 2580 447.1 2.4e-125 >>CCDS8856.1 AAAS gene_id:8086|Hs108|chr12 (546 aa) initn: 3852 init1: 3852 opt: 3852 Z-score: 3525.7 bits: 662.1 E(32554): 4.6e-190 Smith-Waterman score: 3852; 100.0% identity (100.0% similar) in 546 aa overlap (1-546:1-546) 10 20 30 40 50 60 pF1KE4 MCSLGLFPPPPPRGQVTLYEHNNELVTGSSYESPPPDFRGQWINLPVLQLTKDPLKTPGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 MCSLGLFPPPPPRGQVTLYEHNNELVTGSSYESPPPDFRGQWINLPVLQLTKDPLKTPGR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 LDHGTRTAFIHHREQVWKRCINIWRDVGLFGVLNEIANSEEEVFEWVKTASGWALALCRW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 LDHGTRTAFIHHREQVWKRCINIWRDVGLFGVLNEIANSEEEVFEWVKTASGWALALCRW 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 ASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSVRVYNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 ASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSVRVYNA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 SSTIVPSLKHRLQRNVASLAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 SSTIVPSLKHRLQRNVASLAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 HPGHTPVTSLAWAPSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRGGGVTNLLWSPDGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 HPGHTPVTSLAWAPSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRGGGVTNLLWSPDGS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 KILATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 KILATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 RCGEGKGCVGGAKSATIVADLSETTIQTPDGEERLGGEAHSMVWDPSGERLAVLMKGKPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 RCGEGKGCVGGAKSATIVADLSETTIQTPDGEERLGGEAHSMVWDPSGERLAVLMKGKPR 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 VQDGKPVILLFRTRNSPVFELLPCGIIQGEPGAQPQLITFHPSFNKGALLSVGWSTGRIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 VQDGKPVILLFRTRNSPVFELLPCGIIQGEPGAQPQLITFHPSFNKGALLSVGWSTGRIA 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 HIPLYFVNAQFPRFSPVLGRAQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS88 HIPLYFVNAQFPRFSPVLGRAQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPH 490 500 510 520 530 540 pF1KE4 SPHSHL :::::: CCDS88 SPHSHL >>CCDS53797.1 AAAS gene_id:8086|Hs108|chr12 (513 aa) initn: 3593 init1: 2562 opt: 2580 Z-score: 2363.8 bits: 447.1 E(32554): 2.4e-125 Smith-Waterman score: 3534; 94.0% identity (94.0% similar) in 546 aa overlap (1-546:1-513) 10 20 30 40 50 60 pF1KE4 MCSLGLFPPPPPRGQVTLYEHNNELVTGSSYESPPPDFRGQWINLPVLQLTKDPLKTPGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MCSLGLFPPPPPRGQVTLYEHNNELVTGSSYESPPPDFRGQWINLPVLQLTKDPLKTPGR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 LDHGTRTAFIHHREQVWKRCINIWRDVGLFGVLNEIANSEEEVFEWVKTASGWALALCRW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 LDHGTRTAFIHHREQVWKRCINIWRDVGLFGVLNEIANSEEEVFEWVKTASGWALALCRW 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 ASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSVRVYNA :::::::::::::::::::::::::::: : CCDS53 ASSLHGSLFPHLSLRSEDLIAEFAQVTN---C---------------------------- 130 140 190 200 210 220 230 240 pF1KE4 SSTIVPSLKHRLQRNVASLAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 --TIVPSLKHRLQRNVASLAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLS 150 160 170 180 190 200 250 260 270 280 290 300 pF1KE4 HPGHTPVTSLAWAPSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRGGGVTNLLWSPDGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 HPGHTPVTSLAWAPSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRGGGVTNLLWSPDGS 210 220 230 240 250 260 310 320 330 340 350 360 pF1KE4 KILATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 KILATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPE 270 280 290 300 310 320 370 380 390 400 410 420 pF1KE4 RCGEGKGCVGGAKSATIVADLSETTIQTPDGEERLGGEAHSMVWDPSGERLAVLMKGKPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 RCGEGKGCVGGAKSATIVADLSETTIQTPDGEERLGGEAHSMVWDPSGERLAVLMKGKPR 330 340 350 360 370 380 430 440 450 460 470 480 pF1KE4 VQDGKPVILLFRTRNSPVFELLPCGIIQGEPGAQPQLITFHPSFNKGALLSVGWSTGRIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 VQDGKPVILLFRTRNSPVFELLPCGIIQGEPGAQPQLITFHPSFNKGALLSVGWSTGRIA 390 400 410 420 430 440 490 500 510 520 530 540 pF1KE4 HIPLYFVNAQFPRFSPVLGRAQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 HIPLYFVNAQFPRFSPVLGRAQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPH 450 460 470 480 490 500 pF1KE4 SPHSHL :::::: CCDS53 SPHSHL 510 546 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 00:20:00 2016 done: Sun Nov 6 00:20:01 2016 Total Scan time: 3.930 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]