(Circular) (Six-base) MAPSORT of: pFN21AB3606.seq Check: 9008 from: 1 to: 5299 pFN21AB3606 5299 bp With 182 enzymes: SgfI * October 20, 2009 10:53 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3109 278 Size: 53 83 186 936 1573 2468 Fragments arranged by size: 2468 1573 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2642 1937 Size: 705 4594 Acc65I G'GTAC_C Cuts at: 2620 2620 Size: 5299 AclI AA'CG_TT Cuts at: 1563 3426 3799 1563 Size: 1863 373 3063 Fragments arranged by size: 3063 1863 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3362 4746 5014 1632 Size: 1730 1384 268 1917 Fragments arranged by size: 1917 1730 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5102 AflIII A'CryG_T Cuts at: 1203 4198 5175 1203 Size: 2995 977 1327 Fragments arranged by size: 2995 1327 977 AgeI A'CCGG_T Cuts at: 4130 4130 Size: 5299 AhdI GACnn_n'nnGTC Cuts at: 4028 4028 Size: 5299 AleI CACnn'nnGTG Cuts at: 1166 2060 2150 1166 Size: 894 90 4315 Fragments arranged by size: 4315 894 90 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5299 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2228 2260 2228 Size: 32 5267 AlwNI CAG_nnn'CTG Cuts at: 2042 3042 4614 2042 Size: 1000 1572 2727 Fragments arranged by size: 2727 1572 1000 ApaI G_GGCC'C Cuts at: 2297 2297 Size: 5299 ApaLI G'TGCA_C Cuts at: 3356 4512 3356 Size: 1156 4143 ApoI r'AATT_y Cuts at: 1493 2608 2834 2986 5095 1493 Size: 1115 226 152 2109 1697 Fragments arranged by size: 2109 1697 1115 226 152 AseI AT'TA_AT Cuts at: 160 1032 3853 160 Size: 872 2821 1606 Fragments arranged by size: 2821 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5299 AvaI C'yCGr_G Cuts at: 1870 1943 2624 1870 Size: 73 681 4545 Fragments arranged by size: 4545 681 73 BamHI G'GATC_C Cuts at: 2629 2996 2629 Size: 367 4932 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2072 2620 4075 618 Size: 325 217 627 285 548 1455 1842 Fragments arranged by size: 1842 1455 627 548 325 285 217 BanII G_rGCy'C Cuts at: 1391 2297 2618 1391 Size: 906 321 4072 Fragments arranged by size: 4072 906 321 BbeI G_GCGC'C Cuts at: 2076 2076 Size: 5299 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4328 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3490 3524 1903 Size: 34 1553 34 3678 Fragments arranged by size: 3678 1553 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3191 4401 3191 Size: 1210 4089 BclI T'GATC_A Cuts at: 1548 1548 Size: 5299 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3910 136 Size: 107 122 71 631 605 2238 1525 Fragments arranged by size: 2238 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5294 5294 Size: 5299 BlpI GC'TnA_GC Cuts at: 2716 2716 Size: 5299 Bme1580I G_kGCm'C Cuts at: 1790 2159 2297 3360 4516 1790 Size: 369 138 1063 1156 2573 Fragments arranged by size: 2573 1156 1063 369 138 BmgBI CAC'GTC Cuts at: 1318 2323 1318 Size: 1005 4294 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3030 3988 442 Size: 416 53 83 399 24 1613 958 1753 Fragments arranged by size: 1753 1613 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5299 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 3959 1239 Size: 2720 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3424 4289 4587 3424 Size: 865 298 4136 Fragments arranged by size: 4136 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3962 882 Size: 617 2463 2219 Fragments arranged by size: 2463 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2116 3090 493 Size: 711 912 974 2702 Fragments arranged by size: 2702 974 912 711 BsaBI GATnn'nnATC Cuts at: 5293 5293 Size: 5299 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2073 2226 3106 3488 Size: 53 83 186 936 540 153 880 382 Cuts at: 3488 4123 275 Size: 635 1451 Fragments arranged by size: 1451 936 880 635 540 382 186 153 83 53 BsaWI w'CCGG_w Cuts at: 2012 3732 4130 4404 4551 4962 2012 Size: 1720 398 274 147 411 2349 Fragments arranged by size: 2349 1720 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5074 Fragments arranged by size: 5074 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5299 BseYI C'CCAG_C Cuts at: 2206 2221 4502 4998 2206 Size: 15 2281 496 2507 Fragments arranged by size: 2507 2281 496 15 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2208 1163 Size: 573 472 4254 Fragments arranged by size: 4254 573 472 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2749 3510 4538 1540 Size: 275 186 748 761 1028 2301 Fragments arranged by size: 2301 1028 761 748 275 186 BsiHKAI G_wGCw'C Cuts at: 3360 3445 4516 3360 Size: 85 1071 4143 Fragments arranged by size: 4143 1071 85 BsmI GAATG_Cn' Cuts at: 2810 2903 2810 Size: 93 5206 BsmBI CGTCTCn'nnnn_ Cuts at: 2233 2233 Size: 5299 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2159 2297 2618 3360 3445 4516 1391 Size: 399 369 138 321 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 369 321 138 85 BspEI T'CCGG_A Cuts at: 4962 4962 Size: 5299 BspHI T'CATG_A Cuts at: 3188 4918 3188 Size: 1730 3569 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2654 844 Size: 1810 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3186 1394 Size: 429 1363 3507 Fragments arranged by size: 3507 1363 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2373 3794 3968 65 Size: 1183 1125 1421 174 1396 Fragments arranged by size: 1421 1396 1183 1125 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3943 4130 1700 Size: 110 2133 187 2869 Fragments arranged by size: 2869 2133 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5299 BssHII G'CGCG_C Cuts at: 1925 2021 1925 Size: 96 5203 BssSI C'ACGA_G Cuts at: 3359 4371 3359 Size: 1012 4287 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5299 BstBI TT'CG_AA Cuts at: 4103 4103 Size: 5299 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5299 BstXI CCAn_nnnn'nTGG Cuts at: 2062 2062 Size: 5299 BstYI r'GATC_y Cuts at: 1972 2629 2996 3381 3398 4850 4936 4948 5294 Size: 657 367 385 17 1452 86 12 346 Cuts at: 5294 1972 Size: 1977 Fragments arranged by size: 1977 1452 657 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2457 513 Size: 552 939 453 3355 Fragments arranged by size: 3355 939 552 453 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2155 487 Size: 683 56 929 3631 Fragments arranged by size: 3631 929 683 56 BtsI GCAGTG_nn' Cuts at: 2548 2815 3609 3629 2548 Size: 267 794 20 4218 Fragments arranged by size: 4218 794 267 20 ClaI AT'CG_AT Cuts at: 1554 2400 1554 Size: 846 4453 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 2240 2275 529 Size: 35 1676 35 3553 Fragments arranged by size: 3553 1676 35 35 DraI TTT'AAA Cuts at: 2603 2603 Size: 5299 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4306 809 Size: 507 2990 1802 Fragments arranged by size: 2990 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2746 3635 5264 Size: 54 1425 50 275 18 916 889 1629 Cuts at: 5264 8 Size: 43 Fragments arranged by size: 1629 1425 916 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2746 1537 Size: 275 934 4090 Fragments arranged by size: 4090 934 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3229 1353 Size: 1876 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3886 4260 4406 387 Size: 1064 138 2297 374 146 1280 Fragments arranged by size: 2297 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 3362 3959 4746 5014 1239 Size: 393 1730 597 787 268 1524 Fragments arranged by size: 1730 1524 787 597 393 268 EcoO109I rG'GnC_Cy Cuts at: 2294 2386 2294 Size: 92 5207 EcoRI G'AATT_C Cuts at: 2608 2986 2608 Size: 378 4921 FspI TGC'GCA Cuts at: 3805 3805 Size: 5299 HaeII r_GCGC'y Cuts at: 1678 2076 4446 1678 Size: 398 2370 2531 Fragments arranged by size: 2531 2370 398 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3940 3972 4014 4046 1373 Size: 32 135 32 2368 32 42 32 2626 Fragments arranged by size: 2626 2368 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2643 2889 669 Size: 988 281 705 246 3079 Fragments arranged by size: 3079 988 705 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5299 HpaI GTT'AAC Cuts at: 2889 2889 Size: 5299 KasI G'GCGC_C Cuts at: 2072 2072 Size: 5299 KpnI G_GTAC'C Cuts at: 2624 2624 Size: 5299 MfeI C'AATT_G Cuts at: 2898 2898 Size: 5299 MluI A'CGCG_T Cuts at: 5175 5175 Size: 5299 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2076 4413 4597 1305 Size: 771 2337 184 2007 Fragments arranged by size: 2337 2007 771 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3477 Fragments arranged by size: 3477 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2060 2150 3257 3616 3775 518 Size: 648 894 90 1107 359 159 2042 Fragments arranged by size: 2042 1107 894 648 359 159 90 MspA1I CmG'CkG Cuts at: 1606 2060 2525 2715 3392 4540 4785 1606 Size: 454 465 190 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 465 454 245 190 NarI GG'CG_CC Cuts at: 2073 2073 Size: 5299 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3808 Fragments arranged by size: 3808 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5299 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5299 NotI GC'GGCC_GC Cuts at: 2746 2746 Size: 5299 NspI r_CATG'y Cuts at: 1132 1229 2657 4202 1132 Size: 97 1428 1545 2229 Fragments arranged by size: 2229 1545 1428 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5299 PciI A'CATG_T Cuts at: 4198 4198 Size: 5299 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5299 PmeI GTTT'AAAC Cuts at: 2603 2603 Size: 5299 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3368 3400 4881 4913 3368 Size: 32 1481 32 3754 Fragments arranged by size: 3754 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 2335 1613 Size: 722 4577 PsiI TTA'TAA Cuts at: 2869 2869 Size: 5299 PspOMI G'GGCC_C Cuts at: 2293 2293 Size: 5299 PstI C_TGCA'G Cuts at: 830 2651 830 Size: 1821 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5299 SalI G'TCGA_C Cuts at: 1936 2641 1936 Size: 705 4594 SbfI CC_TGCA'GG Cuts at: 2651 2651 Size: 5299 ScaI AGT'ACT Cuts at: 3547 5259 3547 Size: 1712 3587 SfcI C'TryA_G Cuts at: 826 1045 2380 2647 3782 4463 4654 826 Size: 219 1335 267 1135 681 191 1471 Fragments arranged by size: 1471 1335 1135 681 267 219 191 SfoI GGC'GCC Cuts at: 2074 2074 Size: 5299 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5299 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5299 SmaI CCC'GGG Cuts at: 1872 2626 1872 Size: 754 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3403 4304 4566 820 Size: 197 926 1460 901 262 1553 Fragments arranged by size: 1553 1460 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3090 493 Size: 2597 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5299 SphI G_CATG'C Cuts at: 1132 2657 1132 Size: 1525 3774 SspI AAT'ATT Cuts at: 5 52 2582 3223 5 Size: 47 2530 641 2081 Fragments arranged by size: 2530 2081 641 47 StuI AGG'CCT Cuts at: 1517 2486 1517 Size: 969 4330 StyI C'CwwG_G Cuts at: 513 1065 2004 2738 513 Size: 552 939 734 3074 Fragments arranged by size: 3074 939 734 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2264 3326 3343 3496 3681 4126 325 Size: 1255 684 1062 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1062 684 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2493 3545 5257 Size: 274 80 33 51 1443 516 1052 1712 Cuts at: 5257 96 Size: 138 Fragments arranged by size: 1712 1443 1052 516 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2442 2474 5259 5291 2442 Size: 32 2785 32 2450 Fragments arranged by size: 2785 2450 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5299 XbaI T'CTAG_A Cuts at: 2635 2635 Size: 5299 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5299 XmaI C'CCGG_G Cuts at: 1870 2624 1870 Size: 754 4545 XmnI GAAnn'nnTTC Cuts at: 3428 3428 Size: 5299 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3107 276 Size: 53 83 186 936 1573 2468 Fragments arranged by size: 2468 1573 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NarI NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI PstI PvuI SalI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AscI AvrII BaeI BbvCI BfrBI BplI Bpu10I BsiWI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI NaeI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SrfI SwaI XcmI