Result of FASTA (omim) for pFN21AB6939
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6939, 208 aa
  1>>>pF1KB6939 208 - 208 aa - 208 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4243+/-0.000301; mu= 11.1567+/- 0.019
 mean_var=159.1408+/-33.306, 0's: 0 Z-trim(121.7): 235  B-trim: 0 in 0/58
 Lambda= 0.101668
 statistics sampled from 38295 (38580) to 38295 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.452), width:  16
 Scan time:  6.490

The best scores are:                                      opt bits E(85289)
NP_001303 (OMIM: 601183) cysteine-rich protein 2 i ( 208) 1528 234.8 7.5e-62
NP_001257766 (OMIM: 601183) cysteine-rich protein  ( 282) 1423 219.6   4e-57
NP_001257770 (OMIM: 601183) cysteine-rich protein  (  87)  619 101.1 5.8e-22
NP_001302 (OMIM: 123875) cysteine-rich protein 1 [ (  77)  427 72.8 1.6e-13
NP_004069 (OMIM: 123876) cysteine and glycine-rich ( 193)  293 53.7 2.4e-07
NP_001180501 (OMIM: 123876) cysteine and glycine-r ( 193)  293 53.7 2.4e-07
NP_001180500 (OMIM: 123876) cysteine and glycine-r ( 193)  293 53.7 2.4e-07
NP_003467 (OMIM: 600824,607482,612124) cysteine an ( 194)  282 52.0 7.4e-07
NP_001180499 (OMIM: 123876) cysteine and glycine-r ( 187)  268 50.0   3e-06
NP_001312 (OMIM: 601871) cysteine and glycine-rich ( 193)  262 49.1 5.7e-06
NP_001287894 (OMIM: 601871) cysteine and glycine-r ( 193)  262 49.1 5.7e-06
NP_004459 (OMIM: 602790) four and a half LIM domai ( 280)  230 44.6 0.00019
XP_016859581 (OMIM: 602567) PREDICTED: LIM and sen ( 317)  216 42.6 0.00084
XP_016859582 (OMIM: 602567) PREDICTED: LIM and sen ( 317)  216 42.6 0.00084
XP_016859583 (OMIM: 602567) PREDICTED: LIM and sen ( 317)  216 42.6 0.00084
XP_016859580 (OMIM: 602567) PREDICTED: LIM and sen ( 317)  216 42.6 0.00084
NP_001180417 (OMIM: 602567) LIM and senescent cell ( 325)  216 42.6 0.00085
NP_004978 (OMIM: 602567) LIM and senescent cell an ( 325)  216 42.6 0.00085
NP_001180411 (OMIM: 602567) LIM and senescent cell ( 329)  216 42.6 0.00086
XP_005264008 (OMIM: 602567) PREDICTED: LIM and sen ( 336)  216 42.6 0.00087
XP_005264007 (OMIM: 602567) PREDICTED: LIM and sen ( 336)  216 42.6 0.00087
NP_001180412 (OMIM: 602567) LIM and senescent cell ( 337)  216 42.6 0.00087
XP_005264006 (OMIM: 602567) PREDICTED: LIM and sen ( 348)  216 42.7 0.00089
NP_001180413 (OMIM: 602567) LIM and senescent cell ( 362)  216 42.7 0.00092
XP_005264005 (OMIM: 602567) PREDICTED: LIM and sen ( 373)  216 42.7 0.00093
NP_001180414 (OMIM: 602567) LIM and senescent cell ( 387)  216 42.7 0.00096
XP_005264003 (OMIM: 602567) PREDICTED: LIM and sen ( 398)  216 42.7 0.00098
XP_005263767 (OMIM: 607908,616827) PREDICTED: LIM  ( 272)  212 41.9  0.0011
NP_001154876 (OMIM: 607908,616827) LIM and senesce ( 336)  212 42.0  0.0013
NP_001154875 (OMIM: 607908,616827) LIM and senesce ( 341)  212 42.1  0.0013
NP_001129509 (OMIM: 607908,616827) LIM and senesce ( 363)  212 42.1  0.0014
NP_060450 (OMIM: 607908,616827) LIM and senescent  ( 365)  212 42.1  0.0014
NP_963849 (OMIM: 602633) four and a half LIM domai ( 279)  194 39.3  0.0072
NP_001305823 (OMIM: 602633) four and a half LIM do ( 279)  194 39.3  0.0072
NP_963851 (OMIM: 602633) four and a half LIM domai ( 279)  194 39.3  0.0072
NP_001034581 (OMIM: 602633) four and a half LIM do ( 279)  194 39.3  0.0072
NP_001441 (OMIM: 602633) four and a half LIM domai ( 279)  194 39.3  0.0072
XP_011509100 (OMIM: 602633) PREDICTED: four and a  ( 279)  194 39.3  0.0072
NP_001305824 (OMIM: 602633) four and a half LIM do ( 279)  194 39.3  0.0072
NP_001305825 (OMIM: 602633) four and a half LIM do ( 279)  194 39.3  0.0072


>>NP_001303 (OMIM: 601183) cysteine-rich protein 2 isofo  (208 aa)
 initn: 1528 init1: 1528 opt: 1528  Z-score: 1231.4  bits: 234.8 E(85289): 7.5e-62
Smith-Waterman score: 1528; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208)

               10        20        30        40        50        60
pF1KB6 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRASSVTTFT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYCHKPCYG
              130       140       150       160       170       180

              190       200        
pF1KB6 ILFGPKGVNTGAVGSYIYDRDPEGKVQP
       ::::::::::::::::::::::::::::
NP_001 ILFGPKGVNTGAVGSYIYDRDPEGKVQP
              190       200        

>>NP_001257766 (OMIM: 601183) cysteine-rich protein 2 is  (282 aa)
 initn: 1423 init1: 1423 opt: 1423  Z-score: 1146.6  bits: 219.6 E(85289): 4e-57
Smith-Waterman score: 1423; 100.0% identity (100.0% similar) in 194 aa overlap (15-208:89-282)

                               10        20        30        40    
pF1KB6                 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGH
                                     ::::::::::::::::::::::::::::::
NP_001 EPSQDHHESQEHRGPLVGSQTCLVHQAEGTAEKVSSLGKDWHKFCLKCERCSKTLTPGGH
       60        70        80        90       100       110        

           50        60        70        80        90       100    
pF1KB6 AEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEHDGKPFCHKPCYATLFGPKGVNIGGAGSYIYEKPLAEGPQVTGPIEVPAARAEERKAS
      120       130       140       150       160       170        

          110       120       130       140       150       160    
pF1KB6 GPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGG
      180       190       200       210       220       230        

          170       180       190       200        
pF1KB6 HAEHDGQPYCHKPCYGILFGPKGVNTGAVGSYIYDRDPEGKVQP
       ::::::::::::::::::::::::::::::::::::::::::::
NP_001 HAEHDGQPYCHKPCYGILFGPKGVNTGAVGSYIYDRDPEGKVQP
      240       250       260       270       280  

>>NP_001257770 (OMIM: 601183) cysteine-rich protein 2 is  (87 aa)
 initn: 619 init1: 619 opt: 619  Z-score: 515.3  bits: 101.1 E(85289): 5.8e-22
Smith-Waterman score: 619; 96.4% identity (98.8% similar) in 83 aa overlap (126-208:5-87)

         100       110       120       130       140       150     
pF1KB6 ARAEERKASGPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCER
                                     ::.:.: :::::::::::::::::::::::
NP_001                           MASKCPKCDKTVYFAEKVTSLGKDWHRPCLRCER
                                         10        20        30    

         160       170       180       190       200        
pF1KB6 CGKTLTPGGHAEHDGQPYCHKPCYGILFGPKGVNTGAVGSYIYDRDPEGKVQP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGKTLTPGGHAEHDGQPYCHKPCYGILFGPKGVNTGAVGSYIYDRDPEGKVQP
           40        50        60        70        80       

>>NP_001302 (OMIM: 123875) cysteine-rich protein 1 [Homo  (77 aa)
 initn: 489 init1: 427 opt: 427  Z-score: 363.7  bits: 72.8 E(85289): 1.6e-13
Smith-Waterman score: 427; 68.5% identity (91.8% similar) in 73 aa overlap (126-198:4-76)

         100       110       120       130       140       150     
pF1KB6 ARAEERKASGPPKGPSRASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCER
                                     ::.:.:.:::::.:::::::::::::.::.
NP_001                            MPKCPKCNKEVYFAERVTSLGKDWHRPCLKCEK
                                          10        20        30   

         160       170       180       190       200        
pF1KB6 CGKTLTPGGHAEHDGQPYCHKPCYGILFGPKGVNTGAVGSYIYDRDPEGKVQP
       :::::: ::::::.:.:::..:::. .::::: . :.. :. .          
NP_001 CGKTLTSGGHAEHEGKPYCNHPCYAAMFGPKGFGRGGAESHTFK         
            40        50        60        70                

>>NP_004069 (OMIM: 123876) cysteine and glycine-rich pro  (193 aa)
 initn: 451 init1: 225 opt: 293  Z-score: 252.8  bits: 53.7 E(85289): 2.4e-07
Smith-Waterman score: 474; 40.1% identity (60.4% similar) in 197 aa overlap (4-198:9-191)

                    10        20        30        40        50     
pF1KB6      MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHK
               ::  :.:::::::.:.  :...:: :. :  :.:.:     : :  . .: :
NP_004 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYC-K
               10        20        30        40        50          

          60        70         80        90       100       110    
pF1KB6 PCYATLFGPKGVNIG-GAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRAS
        ::.  .:::: . : :::.   .:  . :            . ::  .  :  .:. ::
NP_004 SCYGKKYGPKGYGYGQGAGTLSTDKGESLG-----------IKHEEAPGHRPTTNPN-AS
      60        70        80                   90       100        

          120       130       140       150       160       170    
pF1KB6 SVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYC
       . .   :  . :::::. :: :::: . ::.::. :.:: .::: :     :..::. ::
NP_004 KFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYC
       110       120       130       140       150       160       

          180       190        200        
pF1KB6 HKPCYGILFGPKGVNTG-AVGSYIYDRDPEGKVQP
        : ::.  ::::: . : ..:. ..          
NP_004 -KGCYAKNFGPKGFGFGQGAGALVHSE        
        170       180       190           

>>NP_001180501 (OMIM: 123876) cysteine and glycine-rich   (193 aa)
 initn: 451 init1: 225 opt: 293  Z-score: 252.8  bits: 53.7 E(85289): 2.4e-07
Smith-Waterman score: 474; 40.1% identity (60.4% similar) in 197 aa overlap (4-198:9-191)

                    10        20        30        40        50     
pF1KB6      MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHK
               ::  :.:::::::.:.  :...:: :. :  :.:.:     : :  . .: :
NP_001 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYC-K
               10        20        30        40        50          

          60        70         80        90       100       110    
pF1KB6 PCYATLFGPKGVNIG-GAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRAS
        ::.  .:::: . : :::.   .:  . :            . ::  .  :  .:. ::
NP_001 SCYGKKYGPKGYGYGQGAGTLSTDKGESLG-----------IKHEEAPGHRPTTNPN-AS
      60        70        80                   90       100        

          120       130       140       150       160       170    
pF1KB6 SVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYC
       . .   :  . :::::. :: :::: . ::.::. :.:: .::: :     :..::. ::
NP_001 KFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYC
       110       120       130       140       150       160       

          180       190        200        
pF1KB6 HKPCYGILFGPKGVNTG-AVGSYIYDRDPEGKVQP
        : ::.  ::::: . : ..:. ..          
NP_001 -KGCYAKNFGPKGFGFGQGAGALVHSE        
        170       180       190           

>>NP_001180500 (OMIM: 123876) cysteine and glycine-rich   (193 aa)
 initn: 451 init1: 225 opt: 293  Z-score: 252.8  bits: 53.7 E(85289): 2.4e-07
Smith-Waterman score: 474; 40.1% identity (60.4% similar) in 197 aa overlap (4-198:9-191)

                    10        20        30        40        50     
pF1KB6      MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHK
               ::  :.:::::::.:.  :...:: :. :  :.:.:     : :  . .: :
NP_001 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYC-K
               10        20        30        40        50          

          60        70         80        90       100       110    
pF1KB6 PCYATLFGPKGVNIG-GAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRAS
        ::.  .:::: . : :::.   .:  . :            . ::  .  :  .:. ::
NP_001 SCYGKKYGPKGYGYGQGAGTLSTDKGESLG-----------IKHEEAPGHRPTTNPN-AS
      60        70        80                   90       100        

          120       130       140       150       160       170    
pF1KB6 SVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYC
       . .   :  . :::::. :: :::: . ::.::. :.:: .::: :     :..::. ::
NP_001 KFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKACFRCAKCGKGLESTTLADKDGEIYC
       110       120       130       140       150       160       

          180       190        200        
pF1KB6 HKPCYGILFGPKGVNTG-AVGSYIYDRDPEGKVQP
        : ::.  ::::: . : ..:. ..          
NP_001 -KGCYAKNFGPKGFGFGQGAGALVHSE        
        170       180       190           

>>NP_003467 (OMIM: 600824,607482,612124) cysteine and gl  (194 aa)
 initn: 465 init1: 220 opt: 282  Z-score: 244.1  bits: 52.0 E(85289): 7.4e-07
Smith-Waterman score: 462; 37.5% identity (61.0% similar) in 200 aa overlap (3-201:8-194)

                    10        20        30        40        50     
pF1KB6      MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHK
              .::  :.:::: ::...  :...:: :..:  : :.:     : :... .: :
NP_003 MPNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYC-K
               10        20        30        40        50          

          60        70         80        90       100       110    
pF1KB6 PCYATLFGPKGVNIG-GAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRAS
        ::.  .::::.. : :::    .     : :     . :   :.   .:.:       :
NP_003 VCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQ---QSPKP-ARSVTTSNP-------S
      60        70        80        90           100               

          120       130       140       150       160       170    
pF1KB6 SVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYC
       . :.  :: . ::::.:.:: :::: . :: ::. :.::  :::.:   . ...::. ::
NP_003 KFTAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYC
      110       120       130       140       150       160        

          180       190       200        
pF1KB6 HKPCYGILFGPKGVNTGAVGSYIYDRDPEGKVQP
        : ::.  ::: :.. :.. . .  ..       
NP_003 -KVCYAKNFGPTGIGFGGLTQQVEKKE       
       170       180       190           

>>NP_001180499 (OMIM: 123876) cysteine and glycine-rich   (187 aa)
 initn: 359 init1: 150 opt: 268  Z-score: 233.1  bits: 50.0 E(85289): 3e-06
Smith-Waterman score: 436; 38.6% identity (58.4% similar) in 197 aa overlap (4-198:9-185)

                    10        20        30        40        50     
pF1KB6      MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHK
               ::  :.:::::::.:.  :...:: :. :  :.:.:     : :  . .: :
NP_001 MPNWGGGKKCGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLDSTTVAVHGEEIYC-K
               10        20        30        40        50          

          60        70         80        90       100       110    
pF1KB6 PCYATLFGPKGVNIG-GAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRAS
        ::.  .:::: . : :::.   .:  . :            . ::  .  :  .:. ::
NP_001 SCYGKKYGPKGYGYGQGAGTLSTDKGESLG-----------IKHEEAPGHRPTTNPN-AS
      60        70        80                   90       100        

          120       130       140       150       160       170    
pF1KB6 SVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYC
       . .   :  . :::::. :: :::      .::. :.:: .::: :     :..::. ::
NP_001 KFAQKIGGSERCPRCSQAVYAAEK------SWHKACFRCAKCGKGLESTTLADKDGEIYC
       110       120       130             140       150       160 

          180       190        200        
pF1KB6 HKPCYGILFGPKGVNTG-AVGSYIYDRDPEGKVQP
        : ::.  ::::: . : ..:. ..          
NP_001 -KGCYAKNFGPKGFGFGQGAGALVHSE        
              170       180               

>>NP_001312 (OMIM: 601871) cysteine and glycine-rich pro  (193 aa)
 initn: 418 init1: 195 opt: 262  Z-score: 228.2  bits: 49.1 E(85289): 5.7e-06
Smith-Waterman score: 437; 35.9% identity (59.1% similar) in 198 aa overlap (3-198:8-191)

                    10        20        30        40        50     
pF1KB6      MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHK
              .::  : .::: ::.:.  :...:. :. :  : :.:     : :: . .: :
NP_001 MPVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYC-K
               10        20        30        40        50          

          60        70         80        90       100       110    
pF1KB6 PCYATLFGPKGVNIG-GAGSYIYEKPLAEGPQVTGPIEVPAARAEERKASGPPKGPSRAS
        ::.  .:::: . : :::.  ...    : .   :  :   :        :  .:. ..
NP_001 SCYGKKYGPKGYGYGQGAGTLNMDRGERLGIK---PESVQPHR--------PTTNPNTSK
      60        70        80        90                  100        

          120       130       140       150       160       170    
pF1KB6 SVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRPCLRCERCGKTLTPGGHAEHDGQPYC
        .  . :  . : ::. .:: :::. . :: ::. :.:: .:::.:     .:..:. ::
NP_001 FAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYC
      110        120       130       140       150       160       

          180       190        200        
pF1KB6 HKPCYGILFGPKGVNTG-AVGSYIYDRDPEGKVQP
        : ::.  ::::: . : ..:. ..          
NP_001 -KGCYAKNFGPKGFGYGQGAGALVHAQ        
        170       180       190           




208 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:30:14 2016 done: Sat Nov  5 14:30:15 2016
 Total Scan time:  6.490 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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