Result of FASTA (omim) for pFN21AE1446
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1446, 325 aa
  1>>>pF1KE1446 325 - 325 aa - 325 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2022+/-0.000549; mu= 11.2456+/- 0.034
 mean_var=130.4174+/-28.333, 0's: 0 Z-trim(110.8): 271  B-trim: 182 in 1/48
 Lambda= 0.112307
 statistics sampled from 18928 (19282) to 18928 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.589), E-opt: 0.2 (0.226), width:  16
 Scan time:  6.630

The best scores are:                                      opt bits E(85289)
NP_003748 (OMIM: 603911) eukaryotic translation in ( 325) 2225 372.5 6.5e-103
XP_016858160 (OMIM: 603911) PREDICTED: eukaryotic  ( 192)  991 172.4 6.9e-43
XP_011534221 (OMIM: 612870) PREDICTED: PH-interact (1001)  228 49.5 3.6e-05
NP_060058 (OMIM: 609012) WD repeat-containing prot ( 334)  219 47.5 4.6e-05
NP_438172 (OMIM: 609012) WD repeat-containing prot ( 334)  219 47.5 4.6e-05
XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-c ( 334)  219 47.5 4.6e-05
XP_011534220 (OMIM: 612870) PREDICTED: PH-interact (1649)  228 49.7 5.1e-05
XP_005248786 (OMIM: 612870) PREDICTED: PH-interact (1820)  228 49.7 5.4e-05
NP_060404 (OMIM: 612870) PH-interacting protein [H (1821)  228 49.7 5.4e-05
XP_016884874 (OMIM: 300553,300659) PREDICTED: brom ( 825)  212 46.8 0.00019
XP_005262170 (OMIM: 300553,300659) PREDICTED: brom (1752)  212 47.1 0.00032
NP_694984 (OMIM: 300553,300659) bromodomain and WD (1802)  212 47.1 0.00032
NP_004805 (OMIM: 607797) U5 small nuclear ribonucl ( 357)  198 44.2 0.00051
NP_001078 (OMIM: 603488) angio-associated migrator ( 434)  197 44.1 0.00065
NP_001289474 (OMIM: 603488) angio-associated migra ( 435)  197 44.1 0.00065
XP_011530390 (OMIM: 606278) PREDICTED: F-box/WD re ( 540)  176 40.8   0.008
NP_001013433 (OMIM: 606278) F-box/WD repeat-contai ( 589)  176 40.8  0.0085
NP_060785 (OMIM: 606278) F-box/WD repeat-containin ( 627)  176 40.8  0.0089
XP_011530388 (OMIM: 606278) PREDICTED: F-box/WD re ( 679)  176 40.9  0.0094
XP_011530389 (OMIM: 606278) PREDICTED: F-box/WD re ( 679)  176 40.9  0.0094
XP_016863851 (OMIM: 606278) PREDICTED: F-box/WD re ( 707)  176 40.9  0.0096
XP_011530386 (OMIM: 606278) PREDICTED: F-box/WD re ( 707)  176 40.9  0.0096
NP_361014 (OMIM: 606278) F-box/WD repeat-containin ( 707)  176 40.9  0.0096
XP_011530387 (OMIM: 606278) PREDICTED: F-box/WD re ( 707)  176 40.9  0.0096
XP_011530385 (OMIM: 606278) PREDICTED: F-box/WD re ( 707)  176 40.9  0.0096


>>NP_003748 (OMIM: 603911) eukaryotic translation initia  (325 aa)
 initn: 2225 init1: 2225 opt: 2225  Z-score: 1968.7  bits: 372.5 E(85289): 6.5e-103
Smith-Waterman score: 2225; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KE1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 FVSFFDLRDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHESGELNQYSAKSGEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FVSFFDLRDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHESGELNQYSAKSGEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YDHVVLGGGQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSY
              250       260       270       280       290       300

              310       320     
pF1KE1 SSGGEDGYVRIHYFDPQYFEFEFEA
       :::::::::::::::::::::::::
NP_003 SSGGEDGYVRIHYFDPQYFEFEFEA
              310       320     

>>XP_016858160 (OMIM: 603911) PREDICTED: eukaryotic tran  (192 aa)
 initn: 991 init1: 991 opt: 991  Z-score: 891.0  bits: 172.4 E(85289): 6.9e-43
Smith-Waterman score: 991; 99.3% identity (100.0% similar) in 150 aa overlap (176-325:43-192)

         150       160       170       180       190       200     
pF1KE1 DSKITSAVWGPLGECIIAGHESGELNQYSAKSGEVLVNVKEHSRQINDIQLSRDMTMFVT
                                     .:::::::::::::::::::::::::::::
XP_016 ELCGVWTLTGTPSMSSLAQLTTAVVSGTVKQSGEVLVNVKEHSRQINDIQLSRDMTMFVT
             20        30        40        50        60        70  

         210       220       230       240       250       260     
pF1KE1 ASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPNYDHVVLGGGQEAMDVTTTSTRIGKF
             80        90       100       110       120       130  

         270       280       290       300       310       320     
pF1KE1 EARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRIHYFDPQYFEFEFEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRIHYFDPQYFEFEFEA
            140       150       160       170       180       190  

>>XP_011534221 (OMIM: 612870) PREDICTED: PH-interacting   (1001 aa)
 initn: 230 init1: 165 opt: 228  Z-score: 213.9  bits: 49.5 E(85289): 3.6e-05
Smith-Waterman score: 240; 22.8% identity (54.7% similar) in 316 aa overlap (8-309:181-491)

                                      10        20        30       
pF1KE1                        MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVW
                                     ::  :.  . ..: :  .:: . : .:..:
XP_011 FSRKLNGKYRLERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIW
              160       170       180       190       200       210

        40        50        60        70        80        90       
pF1KE1 YSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSA-V
        . .:. :.:  ::.. .  . .....  . .:: :.  :.:  .:   ::.:. .:: .
XP_011 ATDDGRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASI
              220       230       240       250       260       270

        100         110       120       130          140       150 
pF1KE1 RTCGFD--FGGNIIMFSTDKQMGYQCFVSFFDLRDPSQID-NNEP--YMKIPCNDSKITS
        .  :.   .:.  ..:.    :  ::     : : . .  : .:  . . :    ..  
XP_011 TSLQFSPLCSGSKRYLSSTGADGTICFW----LWDAGTLKINPRPAKFTERPRPGVQMIC
              280       290           300       310       320      

             160       170         180       190       200         
pF1KE1 AVWGPLGECIIAGHESGELNQYSAKSG--EVLVNVKEHSRQINDIQLSRDMTMFVTASKD
       . ..  :  . .:  .  .  :   ::  : . ... :. ....::.:   . ::..:.:
XP_011 SSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRD
        330       340       350       360       370       380      

     210       220         230       240        250         260    
pF1KE1 NTAKLFDSTTLEHQKTF--RTERPVNSAALSPNYDHVV-LGGGQEAMDV--TTTSTRIGK
       .::....    : .. .   . ::...  :.   :... .   . : :   .:. : ...
XP_011 GTARIWQFKRREWKSILLDMATRPAGQN-LQGIEDKITKMKVTMVAWDRHDNTVITAVNN
        390       400       410        420       430       440     

          270       280       290        300       310       320   
pF1KE1 FEARFFHLAFEEEFGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRIHYFDPQYFEFEF
       .  . ..    . .  . ::   .  .  :: : .   :.:.:: :              
XP_011 MTLKVWNSYTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKIRSY
         450       460       470       480       490       500     

                                                                   
pF1KE1 EA                                                          
                                                                   
XP_011 FNMIEGQGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSSSKYDKIADQMFFHSDYRPL
         510       520       530       540       550       560     

>>NP_060058 (OMIM: 609012) WD repeat-containing protein   (334 aa)
 initn: 255 init1: 197 opt: 219  Z-score: 212.0  bits: 47.5 E(85289): 4.6e-05
Smith-Waterman score: 246; 24.1% identity (59.0% similar) in 249 aa overlap (6-227:83-328)

                                        10        20        30     
pF1KE1                          MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVN
                                     ..::. .:... .. ...:: ... :  ..
NP_060 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK
             60        70        80        90       100       110  

          40        50        60        70        80        90     
pF1KE1 VWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNS-
       .:   .:. : :  ::.. :.: . . ... ...:: :.: :.:: .::: :  : ..: 
NP_060 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD
            120       130       140       150       160       170  

          100       110               120       130           140  
pF1KE1 AVRTCGFDFGGNIIMFST--------DKQMGYQCFVSFFDLRDPS----QIDNNEPYMKI
        : .  :.  :..:. :.        :   : ::. ...:  .:     ... :  :.  
NP_060 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILA
            180       190       200        210       220       230 

            150        160            170       180             190
pF1KE1 PCNDSKITSAVWG-PLGECI--IAGHESGE---LNQYSAKSGEVLVNVKEHSR------Q
          :.  :  .:    :.:.   .::.. .   . ..:. .:. .:. .: .       :
NP_060 ATLDN--TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ
               240       250       260       270       280         

                200       210       220       230       240        
pF1KE1 INDI--QLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPNYDHVVLGG
        ..:  .:.    . ....   : ... :..::..::..                     
NP_060 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC               
     290       300       310       320       330                   

      250       260       270       280       290       300        
pF1KE1 GQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSYSSGGEDGY

>>NP_438172 (OMIM: 609012) WD repeat-containing protein   (334 aa)
 initn: 255 init1: 197 opt: 219  Z-score: 212.0  bits: 47.5 E(85289): 4.6e-05
Smith-Waterman score: 246; 24.1% identity (59.0% similar) in 249 aa overlap (6-227:83-328)

                                        10        20        30     
pF1KE1                          MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVN
                                     ..::. .:... .. ...:: ... :  ..
NP_438 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK
             60        70        80        90       100       110  

          40        50        60        70        80        90     
pF1KE1 VWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNS-
       .:   .:. : :  ::.. :.: . . ... ...:: :.: :.:: .::: :  : ..: 
NP_438 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD
            120       130       140       150       160       170  

          100       110               120       130           140  
pF1KE1 AVRTCGFDFGGNIIMFST--------DKQMGYQCFVSFFDLRDPS----QIDNNEPYMKI
        : .  :.  :..:. :.        :   : ::. ...:  .:     ... :  :.  
NP_438 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILA
            180       190       200        210       220       230 

            150        160            170       180             190
pF1KE1 PCNDSKITSAVWG-PLGECI--IAGHESGE---LNQYSAKSGEVLVNVKEHSR------Q
          :.  :  .:    :.:.   .::.. .   . ..:. .:. .:. .: .       :
NP_438 ATLDN--TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ
               240       250       260       270       280         

                200       210       220       230       240        
pF1KE1 INDI--QLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPNYDHVVLGG
        ..:  .:.    . ....   : ... :..::..::..                     
NP_438 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC               
     290       300       310       320       330                   

      250       260       270       280       290       300        
pF1KE1 GQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSYSSGGEDGY

>>XP_005272220 (OMIM: 609012) PREDICTED: WD repeat-conta  (334 aa)
 initn: 255 init1: 197 opt: 219  Z-score: 212.0  bits: 47.5 E(85289): 4.6e-05
Smith-Waterman score: 246; 24.1% identity (59.0% similar) in 249 aa overlap (6-227:83-328)

                                        10        20        30     
pF1KE1                          MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVN
                                     ..::. .:... .. ...:: ... :  ..
XP_005 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK
             60        70        80        90       100       110  

          40        50        60        70        80        90     
pF1KE1 VWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNS-
       .:   .:. : :  ::.. :.: . . ... ...:: :.: :.:: .::: :  : ..: 
XP_005 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD
            120       130       140       150       160       170  

          100       110               120       130           140  
pF1KE1 AVRTCGFDFGGNIIMFST--------DKQMGYQCFVSFFDLRDPS----QIDNNEPYMKI
        : .  :.  :..:. :.        :   : ::. ...:  .:     ... :  :.  
XP_005 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILA
            180       190       200        210       220       230 

            150        160            170       180             190
pF1KE1 PCNDSKITSAVWG-PLGECI--IAGHESGE---LNQYSAKSGEVLVNVKEHSR------Q
          :.  :  .:    :.:.   .::.. .   . ..:. .:. .:. .: .       :
XP_005 ATLDN--TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ
               240       250       260       270       280         

                200       210       220       230       240        
pF1KE1 INDI--QLSRDMTMFVTASKDNTAKLFDSTTLEHQKTFRTERPVNSAALSPNYDHVVLGG
        ..:  .:.    . ....   : ... :..::..::..                     
XP_005 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC               
     290       300       310       320       330                   

      250       260       270       280       290       300        
pF1KE1 GQEAMDVTTTSTRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHPDGKSYSSGGEDGY

>>XP_011534220 (OMIM: 612870) PREDICTED: PH-interacting   (1649 aa)
 initn: 230 init1: 165 opt: 228  Z-score: 211.2  bits: 49.7 E(85289): 5.1e-05
Smith-Waterman score: 240; 22.8% identity (54.7% similar) in 316 aa overlap (8-309:9-319)

                10        20        30        40        50         
pF1KE1  MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVD
               ::  :.  . ..: :  .:: . : .:..: . .:. :.:  ::.. .  . 
XP_011 MKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMA
               10        20        30        40        50        60

      60        70        80        90        100         110      
pF1KE1 ADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSA-VRTCGFD--FGGNIIMFSTDKQM
       .....  . .:: :.  :.:  .:   ::.:. .:: . .  :.   .:.  ..:.    
XP_011 VNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGAD
               70        80        90       100       110       120

        120       130          140       150       160       170   
pF1KE1 GYQCFVSFFDLRDPSQID-NNEP--YMKIPCNDSKITSAVWGPLGECIIAGHESGELNQY
       :  ::     : : . .  : .:  . . :    ..  . ..  :  . .:  .  .  :
XP_011 GTICFW----LWDAGTLKINPRPAKFTERPRPGVQMICSSFSAGGMFLATGSTDHIIRVY
                  130       140       150       160       170      

             180       190       200       210       220           
pF1KE1 SAKSG--EVLVNVKEHSRQINDIQLSRDMTMFVTASKDNTAKLFDSTTLEHQKTF--RTE
          ::  : . ... :. ....::.:   . ::..:.:.::....    : .. .   . 
XP_011 FFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRDGTARIWQFKRREWKSILLDMAT
        180       190       200       210       220       230      

     230       240        250         260       270       280      
pF1KE1 RPVNSAALSPNYDHVV-LGGGQEAMDV--TTTSTRIGKFEARFFHLAFEEEFGRVKGHFG
       ::...  :.   :... .   . : :   .:. : ....  . ..    . .  . ::  
XP_011 RPAGQN-LQGIEDKITKMKVTMVAWDRHDNTVITAVNNMTLKVWNSYTGQLIHVLMGHED
        240        250       260       270       280       290     

        290        300       310       320                         
pF1KE1 PINSVAFHP-DGKSYSSGGEDGYVRIHYFDPQYFEFEFEA                    
        .  .  :: : .   :.:.:: :                                    
XP_011 EVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKIRSYFNMIEGQGHGAVFDCKCSPDGQ
         300       310       320       330       340       350     

>>XP_005248786 (OMIM: 612870) PREDICTED: PH-interacting   (1820 aa)
 initn: 230 init1: 165 opt: 228  Z-score: 210.6  bits: 49.7 E(85289): 5.4e-05
Smith-Waterman score: 240; 22.8% identity (54.7% similar) in 316 aa overlap (8-309:181-491)

                                      10        20        30       
pF1KE1                        MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVW
                                     ::  :.  . ..: :  .:: . : .:..:
XP_005 FSRKLNGKYRLERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIW
              160       170       180       190       200       210

        40        50        60        70        80        90       
pF1KE1 YSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSA-V
        . .:. :.:  ::.. .  . .....  . .:: :.  :.:  .:   ::.:. .:: .
XP_005 ATDDGRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASI
              220       230       240       250       260       270

        100         110       120       130          140       150 
pF1KE1 RTCGFD--FGGNIIMFSTDKQMGYQCFVSFFDLRDPSQID-NNEP--YMKIPCNDSKITS
        .  :.   .:.  ..:.    :  ::     : : . .  : .:  . . :    ..  
XP_005 TSLQFSPLCSGSKRYLSSTGADGTICFW----LWDAGTLKINPRPAKFTERPRPGVQMIC
              280       290           300       310       320      

             160       170         180       190       200         
pF1KE1 AVWGPLGECIIAGHESGELNQYSAKSG--EVLVNVKEHSRQINDIQLSRDMTMFVTASKD
       . ..  :  . .:  .  .  :   ::  : . ... :. ....::.:   . ::..:.:
XP_005 SSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRD
        330       340       350       360       370       380      

     210       220         230       240        250         260    
pF1KE1 NTAKLFDSTTLEHQKTF--RTERPVNSAALSPNYDHVV-LGGGQEAMDV--TTTSTRIGK
       .::....    : .. .   . ::...  :.   :... .   . : :   .:. : ...
XP_005 GTARIWQFKRREWKSILLDMATRPAGQN-LQGIEDKITKMKVTMVAWDRHDNTVITAVNN
        390       400       410        420       430       440     

          270       280       290        300       310       320   
pF1KE1 FEARFFHLAFEEEFGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRIHYFDPQYFEFEF
       .  . ..    . .  . ::   .  .  :: : .   :.:.:: :              
XP_005 MTLKVWNSYTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKIRSY
         450       460       470       480       490       500     

                                                                   
pF1KE1 EA                                                          
                                                                   
XP_005 FNMIEGQGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSSSKYDKIADQMFFHSDYRPL
         510       520       530       540       550       560     

>>NP_060404 (OMIM: 612870) PH-interacting protein [Homo   (1821 aa)
 initn: 230 init1: 165 opt: 228  Z-score: 210.6  bits: 49.7 E(85289): 5.4e-05
Smith-Waterman score: 240; 22.8% identity (54.7% similar) in 316 aa overlap (8-309:181-491)

                                      10        20        30       
pF1KE1                        MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVW
                                     ::  :.  . ..: :  .:: . : .:..:
NP_060 FSRKLNGKYRLERLVPTAVYQHMKMHKRILGHLSSVYCVTFDRTGRRIFTGSDDCLVKIW
              160       170       180       190       200       210

        40        50        60        70        80        90       
pF1KE1 YSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSA-V
        . .:. :.:  ::.. .  . .....  . .:: :.  :.:  .:   ::.:. .:: .
NP_060 ATDDGRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASI
              220       230       240       250       260       270

        100         110       120       130          140       150 
pF1KE1 RTCGFD--FGGNIIMFSTDKQMGYQCFVSFFDLRDPSQID-NNEP--YMKIPCNDSKITS
        .  :.   .:.  ..:.    :  ::     : : . .  : .:  . . :    ..  
NP_060 TSLQFSPLCSGSKRYLSSTGADGTICFW----LWDAGTLKINPRPAKFTERPRPGVQMIC
              280       290           300       310       320      

             160       170         180       190       200         
pF1KE1 AVWGPLGECIIAGHESGELNQYSAKSG--EVLVNVKEHSRQINDIQLSRDMTMFVTASKD
       . ..  :  . .:  .  .  :   ::  : . ... :. ....::.:   . ::..:.:
NP_060 SSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRD
        330       340       350       360       370       380      

     210       220         230       240        250         260    
pF1KE1 NTAKLFDSTTLEHQKTF--RTERPVNSAALSPNYDHVV-LGGGQEAMDV--TTTSTRIGK
       .::....    : .. .   . ::...  :.   :... .   . : :   .:. : ...
NP_060 GTARIWQFKRREWKSILLDMATRPAGQN-LQGIEDKITKMKVTMVAWDRHDNTVITAVNN
        390       400       410        420       430       440     

          270       280       290        300       310       320   
pF1KE1 FEARFFHLAFEEEFGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRIHYFDPQYFEFEF
       .  . ..    . .  . ::   .  .  :: : .   :.:.:: :              
NP_060 MTLKVWNSYTGQLIHVLMGHEDEVFVLEPHPFDPRVLFSAGHDGNVIVWDLARGVKIRSY
         450       460       470       480       490       500     

                                                                   
pF1KE1 EA                                                          
                                                                   
NP_060 FNMIEGQGHGAVFDCKCSPDGQHFACTDSHGHLLIFGFGSSSKYDKIADQMFFHSDYRPL
         510       520       530       540       550       560     

>>XP_016884874 (OMIM: 300553,300659) PREDICTED: bromodom  (825 aa)
 initn: 193 init1: 162 opt: 212  Z-score: 200.9  bits: 46.8 E(85289): 0.00019
Smith-Waterman score: 267; 23.5% identity (55.0% similar) in 327 aa overlap (8-315:178-496)

                                      10        20        30       
pF1KE1                        MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVW
                                     ::  :.  . ..: :  .:: . : .:..:
XP_016 SARQLTGCSRFGHIFPSSAYQHIKMHKRILGHLSSVYCVAFDRSGRRIFTGSDDCLVKIW
       150       160       170       180       190       200       

        40        50        60        70        80        90       
pF1KE1 YSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSA--
        . .:. :.:  ::.. .  . .....  . .:: :.  :.:  .:   .:.:. .::  
XP_016 ATDDGRLLATLRGHSAEISDMAVNYENTLIAAGSCDKVVRVWCLRTCAPVAVLQGHSASI
       210       220       230       240       250       260       

           100       110       120            130        140       
pF1KE1 --VRTCGFDFGGNIIMFSTDKQMGYQCF----VSFFDLRD-PSQI-DNNEPYMKIPCNDS
         .. :    : :  . ::  . :  ::    :. . .:: : .. . ..: ..: :  :
XP_016 TSIQFCPSTKGTNRYLTSTGAD-GTICFWQWHVKTMKFRDRPVKFTERSRPGVQISC--S
       270       280        290       300       310       320      

       150       160       170         180       190         200   
pF1KE1 KITSAVWGPLGECIIAGHESGELNQY--SAKSGEVLVNVKEHSRQINDIQLSR--DMTMF
       ...:.     :  : .:  .  .  :  ...  : ..... :. ..  .:.    :   :
XP_016 SFSSG-----GMFITTGSTDHVIRIYYLGSEVPEKIAELESHTDKVVAVQFCNNGDSLRF
               330       340       350       360       370         

           210       220        230       240        250           
pF1KE1 VTASKDNTAKLFDSTTLEHQK-TFRTERPVNSAALSPNYDHVV-LGGGQEAMDV--TTTS
       :..:.:.::....    : .. ..     ...  :  . :... :   . : :   ::. 
XP_016 VSGSRDGTARIWQYQQQEWKSIVLDMATKMTGNNLPSGEDKITKLKVTMVAWDRYDTTVI
     380       390       400       410       420       430         

     260       270       280       290        300       310        
pF1KE1 TRIGKFEARFFHLAFEEEFGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRIHYFDPQY
       : ...:  . ..    . .  ..::   .  .  :: : .   :.:.:: . :  .:   
XP_016 TAVNNFLLKVWNSITGQLLHTLSGHDDEVFVLEAHPFDQRIILSAGHDGNIFIWDLDRGT
     440       450       460       470       480       490         

      320                                                          
pF1KE1 FEFEFEA                                                     
                                                                   
XP_016 KIRNYFNMIEGQGHGAVFDCKFSPDGNHFACTDSHGHLLLFGFGCSKYYEKIPDQMFFHT
     500       510       520       530       540       550         




325 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 23:36:45 2016 done: Sun Nov  6 23:36:46 2016
 Total Scan time:  6.630 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com