FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4448, 463 aa 1>>>pF1KE4448 463 - 463 aa - 463 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0142+/-0.000808; mu= 14.3355+/- 0.049 mean_var=74.1451+/-15.501, 0's: 0 Z-trim(108.4): 6 B-trim: 438 in 1/49 Lambda= 0.148947 statistics sampled from 10215 (10219) to 10215 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.314), width: 16 Scan time: 3.060 The best scores are: opt bits E(32554) CCDS1224.1 NDUFS2 gene_id:4720|Hs108|chr1 ( 463) 3183 693.2 1.5e-199 CCDS53404.1 NDUFS2 gene_id:4720|Hs108|chr1 ( 457) 3126 680.9 7.2e-196 >>CCDS1224.1 NDUFS2 gene_id:4720|Hs108|chr1 (463 aa) initn: 3183 init1: 3183 opt: 3183 Z-score: 3696.1 bits: 693.2 E(32554): 1.5e-199 Smith-Waterman score: 3183; 100.0% identity (100.0% similar) in 463 aa overlap (1-463:1-463) 10 20 30 40 50 60 pF1KE4 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 370 380 390 400 410 420 430 440 450 460 pF1KE4 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR ::::::::::::::::::::::::::::::::::::::::::: CCDS12 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 430 440 450 460 >>CCDS53404.1 NDUFS2 gene_id:4720|Hs108|chr1 (457 aa) initn: 3126 init1: 3126 opt: 3126 Z-score: 3630.0 bits: 680.9 E(32554): 7.2e-196 Smith-Waterman score: 3126; 99.6% identity (99.8% similar) in 457 aa overlap (1-457:1-457) 10 20 30 40 50 60 pF1KE4 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY 370 380 390 400 410 420 430 440 450 460 pF1KE4 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR :::::::::::::::::::::::::::::::::. :: CCDS53 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTRPIV 430 440 450 463 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 00:35:28 2016 done: Sun Nov 6 00:35:29 2016 Total Scan time: 3.060 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]