Result of FASTA (omim) for pFN21AE0921
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0921, 282 aa
  1>>>pF1KE0921 282 - 282 aa - 282 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3485+/-0.000354; mu= 17.0837+/- 0.022
 mean_var=111.8009+/-23.057, 0's: 0 Z-trim(117.1): 109  B-trim: 0 in 0/52
 Lambda= 0.121297
 statistics sampled from 28652 (28776) to 28652 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.337), width:  16
 Scan time:  7.110

The best scores are:                                      opt bits E(85289)
NP_003022 (OMIM: 602212) E3 ubiquitin-protein liga ( 282) 1978 356.5 3.2e-98
XP_006721309 (OMIM: 602212) PREDICTED: E3 ubiquiti ( 282) 1978 356.5 3.2e-98
XP_011521581 (OMIM: 602212) PREDICTED: E3 ubiquiti ( 282) 1978 356.5 3.2e-98
NP_001006611 (OMIM: 602212) E3 ubiquitin-protein l ( 313) 1978 356.6 3.4e-98
NP_005058 (OMIM: 602213) E3 ubiquitin-protein liga ( 324) 1552 282.1 9.5e-76
NP_942146 (OMIM: 615609) seven in absentia homolog ( 269)  636 121.7 1.5e-27


>>NP_003022 (OMIM: 602212) E3 ubiquitin-protein ligase S  (282 aa)
 initn: 1978 init1: 1978 opt: 1978  Z-score: 1884.5  bits: 356.5 E(85289): 3.2e-98
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KE0 MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 CEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 CEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATP
              190       200       210       220       230       240

              250       260       270       280  
pF1KE0 RSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC
       ::::::::::::::::::::::::::::::::::::::::::
NP_003 RSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC
              250       260       270       280  

>>XP_006721309 (OMIM: 602212) PREDICTED: E3 ubiquitin-pr  (282 aa)
 initn: 1978 init1: 1978 opt: 1978  Z-score: 1884.5  bits: 356.5 E(85289): 3.2e-98
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KE0 MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 CEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 CEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATP
              190       200       210       220       230       240

              250       260       270       280  
pF1KE0 RSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC
       ::::::::::::::::::::::::::::::::::::::::::
XP_006 RSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC
              250       260       270       280  

>>XP_011521581 (OMIM: 602212) PREDICTED: E3 ubiquitin-pr  (282 aa)
 initn: 1978 init1: 1978 opt: 1978  Z-score: 1884.5  bits: 356.5 E(85289): 3.2e-98
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KE0 MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 CEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATP
              190       200       210       220       230       240

              250       260       270       280  
pF1KE0 RSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC
       ::::::::::::::::::::::::::::::::::::::::::
XP_011 RSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC
              250       260       270       280  

>>NP_001006611 (OMIM: 602212) E3 ubiquitin-protein ligas  (313 aa)
 initn: 1978 init1: 1978 opt: 1978  Z-score: 1883.9  bits: 356.6 E(85289): 3.4e-98
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:32-313)

                                             10        20        30
pF1KE0                               MSRQTATALPTGTSKCPPSQRVPALTGTTA
                                     ::::::::::::::::::::::::::::::
NP_001 TGKATPPSLYSWRGVLFTCLPAARTRKRKEMSRQTATALPTGTSKCPPSQRVPALTGTTA
              10        20        30        40        50        60 

               40        50        60        70        80        90
pF1KE0 SNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKV
              70        80        90       100       110       120 

              100       110       120       130       140       150
pF1KE0 ANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMH
             130       140       150       160       170       180 

              160       170       180       190       200       210
pF1KE0 QHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQ
             190       200       210       220       230       240 

              220       230       240       250       260       270
pF1KE0 LIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAEN
             250       260       270       280       290       300 

              280  
pF1KE0 GNLGINVTISMC
       ::::::::::::
NP_001 GNLGINVTISMC
             310   

>>NP_005058 (OMIM: 602213) E3 ubiquitin-protein ligase S  (324 aa)
 initn: 1563 init1: 1243 opt: 1552  Z-score: 1480.9  bits: 282.1 E(85289): 9.5e-76
Smith-Waterman score: 1552; 77.6% identity (89.2% similar) in 286 aa overlap (5-282:37-322)

                                         10        20              
pF1KE0                           MSRQTATALPTGTSKCPPSQRV---PALTG----
                                     : .:   :.:  : .  :   :.  :    
NP_005 TGPSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGGGAGP
         10        20        30        40        50        60      

        30        40        50        60        70        80       
pF1KE0 TTASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCRGPLG-SIRNLA
       .. ....:.::::::::::::::::::::.:::::..:: ::.::::::: :  ::::::
NP_005 VSPQHHELTSLFECPVCFDYVLPPILQCQAGHLVCNQCRQKLSCCPTCRGALTPSIRNLA
         70        80        90       100       110       120      

         90       100       110       120       130       140      
pF1KE0 MEKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMP
       :::::..::::::::..:: .:: :::: .::..::.::::::::::::::::::.::: 
NP_005 MEKVASAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMS
        130       140       150       160       170       180      

        150       160       170       180       190       200      
pF1KE0 HLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFF
       :::: ::::::::::::::::::::::::::::::::::: ::::::::::::.::::::
NP_005 HLMHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKYEGHQQFF
        190       200       210       220       230       240      

        210       220       230       240       250       260      
pF1KE0 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL
       ::: :::::::::::::::::::.::::::::::::::.:.:.::::::::::::.::.:
NP_005 AIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHDGVAAAIMNSDCLVFDTAIAHL
        250       260       270       280       290       300      

        270       280    
pF1KE0 FAENGNLGINVTISMC  
       ::.::::::::::: :  
NP_005 FADNGNLGINVTISTCCP
        310       320    

>>NP_942146 (OMIM: 615609) seven in absentia homolog 3 [  (269 aa)
 initn: 623 init1: 520 opt: 636  Z-score: 615.5  bits: 121.7 E(85289): 1.5e-27
Smith-Waterman score: 636; 52.3% identity (79.7% similar) in 172 aa overlap (109-280:90-258)

       80        90       100       110       120       130        
pF1KE0 LGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQ
                                     : : : . : .     :  : ::  ::.:.
NP_942 QGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHAN--PVTPCLCMCPLFSCQWE
      60        70        80        90       100         110       

      140       150       160       170       180       190        
pF1KE0 GSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEK
       : :..:.::: . :. .  ::: .:::::::..::. .::..:.::.: ::.:::.:::.
NP_942 GRLEVVVPHLRQIHR-VDILQGAEIVFLATDMHLPAPADWIIMHSCLGHHFLLVLRKQER
       120       130        140       150       160       170      

      200       210       220       230       240       250        
pF1KE0 YDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLV
       ..:: :::: ..::::  ::. :.:::::: ..::: :::::::. : . ..: ..::::
NP_942 HEGHPQFFATMMLIGTPTQADCFTYRLELNRNHRRLKWEATPRSVLECVDSVITDGDCLV
        180       190       200       210       220       230      

      260       270       280           
pF1KE0 FDTSIAQLFAENGNLGINVTISMC         
       ..::.::::..::.:.:...:.           
NP_942 LNTSLAQLFSDNGSLAIGIAITATEVLPSEAEM
        240       250       260         




282 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:36:05 2016 done: Sat Nov  5 07:36:06 2016
 Total Scan time:  7.110 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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