FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0921, 282 aa 1>>>pF1KE0921 282 - 282 aa - 282 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3341+/-0.000912; mu= 17.4869+/- 0.055 mean_var=115.6554+/-23.168, 0's: 0 Z-trim(110.1): 53 B-trim: 0 in 0/52 Lambda= 0.119259 statistics sampled from 11319 (11367) to 11319 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.349), width: 16 Scan time: 2.320 The best scores are: opt bits E(32554) CCDS10735.1 SIAH1 gene_id:6477|Hs108|chr16 ( 282) 1978 350.8 6.6e-97 CCDS32444.1 SIAH1 gene_id:6477|Hs108|chr16 ( 313) 1978 350.8 7.1e-97 CCDS3152.1 SIAH2 gene_id:6478|Hs108|chr3 ( 324) 1552 277.5 8.4e-75 CCDS41883.1 SIAH3 gene_id:283514|Hs108|chr13 ( 269) 636 119.8 2.1e-27 >>CCDS10735.1 SIAH1 gene_id:6477|Hs108|chr16 (282 aa) initn: 1978 init1: 1978 opt: 1978 Z-score: 1853.2 bits: 350.8 E(32554): 6.6e-97 Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:1-282) 10 20 30 40 50 60 pF1KE0 MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 VCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 VCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 CEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 CEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATP 190 200 210 220 230 240 250 260 270 280 pF1KE0 RSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC :::::::::::::::::::::::::::::::::::::::::: CCDS10 RSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC 250 260 270 280 >>CCDS32444.1 SIAH1 gene_id:6477|Hs108|chr16 (313 aa) initn: 1978 init1: 1978 opt: 1978 Z-score: 1852.7 bits: 350.8 E(32554): 7.1e-97 Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 282 aa overlap (1-282:32-313) 10 20 30 pF1KE0 MSRQTATALPTGTSKCPPSQRVPALTGTTA :::::::::::::::::::::::::::::: CCDS32 TGKATPPSLYSWRGVLFTCLPAARTRKRKEMSRQTATALPTGTSKCPPSQRVPALTGTTA 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE0 SNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 SNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKV 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE0 ANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 ANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMH 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE0 QHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 QHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQ 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE0 LIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 LIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAEN 250 260 270 280 290 300 280 pF1KE0 GNLGINVTISMC :::::::::::: CCDS32 GNLGINVTISMC 310 >>CCDS3152.1 SIAH2 gene_id:6478|Hs108|chr3 (324 aa) initn: 1563 init1: 1243 opt: 1552 Z-score: 1456.4 bits: 277.5 E(32554): 8.4e-75 Smith-Waterman score: 1552; 77.6% identity (89.2% similar) in 286 aa overlap (5-282:37-322) 10 20 pF1KE0 MSRQTATALPTGTSKCPPSQRV---PALTG---- : .: :.: : . : :. : CCDS31 TGPSANKPCSKQPPPQPQHTPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGGGGGAGP 10 20 30 40 50 60 30 40 50 60 70 80 pF1KE0 TTASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCRGPLG-SIRNLA .. ....:.::::::::::::::::::::.:::::..:: ::.::::::: : :::::: CCDS31 VSPQHHELTSLFECPVCFDYVLPPILQCQAGHLVCNQCRQKLSCCPTCRGALTPSIRNLA 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE0 MEKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMP :::::..::::::::..:: .:: :::: .::..::.::::::::::::::::::.::: CCDS31 MEKVASAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMS 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE0 HLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFF :::: ::::::::::::::::::::::::::::::::::: ::::::::::::.:::::: CCDS31 HLMHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEKYEGHQQFF 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE0 AIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQL ::: :::::::::::::::::::.::::::::::::::.:.:.::::::::::::.::.: CCDS31 AIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHDGVAAAIMNSDCLVFDTAIAHL 250 260 270 280 290 300 270 280 pF1KE0 FAENGNLGINVTISMC ::.::::::::::: : CCDS31 FADNGNLGINVTISTCCP 310 320 >>CCDS41883.1 SIAH3 gene_id:283514|Hs108|chr13 (269 aa) initn: 623 init1: 520 opt: 636 Z-score: 605.6 bits: 119.8 E(32554): 2.1e-27 Smith-Waterman score: 636; 52.3% identity (79.7% similar) in 172 aa overlap (109-280:90-258) 80 90 100 110 120 130 pF1KE0 LGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQ : : : . : . : : :: ::.:. CCDS41 QGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHAN--PVTPCLCMCPLFSCQWE 60 70 80 90 100 110 140 150 160 170 180 190 pF1KE0 GSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEK : :..:.::: . :. . ::: .:::::::..::. .::..:.::.: ::.:::.:::. CCDS41 GRLEVVVPHLRQIHR-VDILQGAEIVFLATDMHLPAPADWIIMHSCLGHHFLLVLRKQER 120 130 140 150 160 170 200 210 220 230 240 250 pF1KE0 YDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLV ..:: :::: ..:::: ::. :.:::::: ..::: :::::::. : . ..: ..:::: CCDS41 HEGHPQFFATMMLIGTPTQADCFTYRLELNRNHRRLKWEATPRSVLECVDSVITDGDCLV 180 190 200 210 220 230 260 270 280 pF1KE0 FDTSIAQLFAENGNLGINVTISMC ..::.::::..::.:.:...:. CCDS41 LNTSLAQLFSDNGSLAIGIAITATEVLPSEAEM 240 250 260 282 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 07:36:04 2016 done: Sat Nov 5 07:36:05 2016 Total Scan time: 2.320 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]