FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4488, 510 aa 1>>>pF1KE4488 510 - 510 aa - 510 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2420+/-0.000381; mu= 9.8908+/- 0.024 mean_var=140.1329+/-28.487, 0's: 0 Z-trim(117.0): 14 B-trim: 504 in 2/54 Lambda= 0.108344 statistics sampled from 28584 (28597) to 28584 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.335), width: 16 Scan time: 9.990 The best scores are: opt bits E(85289) NP_005561 (OMIM: 227300,601567) protein ERGIC-53 p ( 510) 3454 551.7 1.9e-156 NP_068591 (OMIM: 609548) protein ERGIC-53-like pre ( 526) 1000 168.1 5.7e-41 NP_006807 (OMIM: 609551) vesicular integral-membra ( 356) 570 100.8 7.1e-21 NP_110432 (OMIM: 609552,616887) VIP36-like protein ( 348) 528 94.2 6.6e-19 NP_001135764 (OMIM: 609552,616887) VIP36-like prot ( 359) 319 61.5 4.6e-09 NP_001309279 (OMIM: 609552,616887) VIP36-like prot ( 210) 306 59.3 1.2e-08 NP_001309280 (OMIM: 609552,616887) VIP36-like prot ( 203) 225 46.7 7.8e-05 NP_001309284 (OMIM: 609552,616887) VIP36-like prot ( 203) 225 46.7 7.8e-05 NP_001309285 (OMIM: 609552,616887) VIP36-like prot ( 203) 225 46.7 7.8e-05 NP_001309275 (OMIM: 609552,616887) VIP36-like prot ( 214) 225 46.7 8.2e-05 NP_001309283 (OMIM: 609552,616887) VIP36-like prot ( 214) 225 46.7 8.2e-05 NP_001309276 (OMIM: 609552,616887) VIP36-like prot ( 221) 225 46.7 8.4e-05 NP_001309281 (OMIM: 609552,616887) VIP36-like prot ( 221) 225 46.7 8.4e-05 >>NP_005561 (OMIM: 227300,601567) protein ERGIC-53 precu (510 aa) initn: 3454 init1: 3454 opt: 3454 Z-score: 2929.8 bits: 551.7 E(85289): 1.9e-156 Smith-Waterman score: 3454; 99.8% identity (100.0% similar) in 510 aa overlap (1-510:1-510) 10 20 30 40 50 60 pF1KE4 MAGSRQRGLRARVRPLFCALLLSLGRFVRGDGVGGDPAVALPHRRFEYKYSFKGPHLVQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MAGSRQRGLRARVRPLFCALLLSLGRFVRGDGVGGDPAVALPHRRFEYKYSFKGPHLVQS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 DGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 DGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 DGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 DGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 DGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 DGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 QGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 QGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQEL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 DKKKEEFQKGHPDLQGQPAEEIFESVGDRELRQVFEGQNRIHLEIKQLNRQLDMILDEQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 DKKKEEFQKGHPDLQGQPAEEIFESVGDRELRQVFEGQNRIHLEIKQLNRQLDMILDEQR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 RYVSSLTEEISKRGAGMPGQHGQITQQELDTVVKTQHEILRQVNEMKNSLSETVRLVSGM :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: NP_005 RYVSSLTEEISKRGAGMPGQHGQITQQELDTVVKTQHEILRQVNEMKNSMSETVRLVSGM 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 QHPGSAGGVYETTQHFIDIKEHLHIVKRDIDNLVQRNMPSNEKPKCPELPPFPSCLSTVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 QHPGSAGGVYETTQHFIDIKEHLHIVKRDIDNLVQRNMPSNEKPKCPELPPFPSCLSTVH 430 440 450 460 470 480 490 500 510 pF1KE4 FIIFVVVQTVLFIGYIMYRSQQEAAAKKFF :::::::::::::::::::::::::::::: NP_005 FIIFVVVQTVLFIGYIMYRSQQEAAAKKFF 490 500 510 >>NP_068591 (OMIM: 609548) protein ERGIC-53-like precurs (526 aa) initn: 900 init1: 435 opt: 1000 Z-score: 856.6 bits: 168.1 E(85289): 5.7e-41 Smith-Waterman score: 1000; 35.5% identity (66.3% similar) in 501 aa overlap (15-501:9-486) 10 20 30 40 50 60 pF1KE4 MAGSRQRGLRARVRPLFCALLLSLGRFVRGDGVGGDPAVALPHRRFEYKYSFKGPHLVQS :::: ::: : : : : :::::: :::::.:. NP_068 MPAVSGPGPLFCLLLLLLDPHSPETGC---P----PLRRFEYKLSFKGPRLALP 10 20 30 40 70 80 90 100 110 120 pF1KE4 DGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGA . .:::.: :.:: . ...:..::.... :.::..... : ::::: .:::: :: :: NP_068 GAGIPFWSHHGDAILGLEEVRLTPSMRNRSGAVWSRASVPFSAWEVEVQMRVTGLGRRGA 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE4 DGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQN .:.:.::....: : :.:. :.:.:::::: .: ...::: .....:.: .. . NP_068 QGMAVWYTRGRGHVGSVLGGLASWDGIGIFFDSPAED-TQDSPAIRVLASDGHIPSEQPG 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE4 DGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPA :::::.:.::. ::::.:.: ::.:::. . : . .:.:.::. . :::. : ... NP_068 DGASQGLGSCHWDFRNRPHPFRARITYWGQRLRMSLNSGLTPS-DPGEFCVDVGPLLLVP 170 180 190 200 210 220 250 260 270 280 290 pF1KE4 QGHFGISAATGGLADDHDVLSFLTFQLTEPGKE-PPTPDKEISEKEKEKYQEEFEHFQQE : ::.::::: :::::::::::::.:.::. : :: : :. .. . : : . NP_068 GGFFGVSAATGTLADDHDVLSFLTFSLSEPSPEVPPQPFLEM-QQLRLARQLEGLWARLG 230 240 250 260 270 280 300 310 320 330 340 350 pF1KE4 LDKKKEEFQKGHPDLQGQPAEEIF---ESVG-DRELRQVFEGQNRIHLEIKQLNRQLDMI : ... :. . ::. .:..: :..: :.. :...: .. .. : .:: NP_068 LGTREDVTPKSDSEAQGE-GERLFDLEETLGRHRRILQALRGLSK---QLAQAERQWKKQ 290 300 310 320 330 340 360 370 380 390 400 pF1KE4 LDE--QRRYVSSLTEEISKRGAGMPGQHGQITQQ------ELDTVVKTQHEILRQVNEMK : : : .. . . : . . ::. :..... .. .... : .:. ..::. NP_068 LGPPGQARPDGGWALDASCQIPSTPGRGGHLSMSLNKDSAKVGALLHGQWTLLQALQEMR 350 360 370 380 390 400 410 420 430 440 450 460 pF1KE4 NSLSETVRLVSGMQHPGSAGGVYETTQHFIDIKEHLHIVKRDIDNLVQRNMPSNEKPKCP .. .::... : :. .::... . : ...... . .. . . :. : NP_068 DA---AVRMAAEAQVSYLPVGI---EHHFLELDHILGLLQEELRGPAK---AAAKAPRPP 410 420 430 440 450 470 480 490 500 510 pF1KE4 ELPPFPS-CLSTVHFIIFVVVQTVLFIGYIMYRSQQEAAAKKFF :: : ::. :......::: :.::. .:.. NP_068 GQPPRASSCLQPGIFLFYLLIQTVGFFGYVHFRQELNKSLQECLSTGSLPLGPAPHTPRA 460 470 480 490 500 510 NP_068 LGILRRQPLPASMPA 520 >>NP_006807 (OMIM: 609551) vesicular integral-membrane p (356 aa) initn: 408 init1: 160 opt: 570 Z-score: 495.7 bits: 100.8 E(85289): 7.1e-21 Smith-Waterman score: 570; 33.2% identity (64.8% similar) in 301 aa overlap (15-310:32-316) 10 20 30 40 pF1KE4 MAGSRQRGLRARVRPLFCALLLSLGRFVRGDGVGGDPAVALPHR ::: ::: :: : .: . :. : NP_006 AAEGWIWRWGWGRRCLGRPGLLGPGPGPTTPLF--LLLLLGS-VTADITDGNS----EHL 10 20 30 40 50 50 60 70 80 90 100 pF1KE4 RFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENW . :. :. :. .....:.: :... .:. .:..:. .:..::.:.. ...: NP_006 KREH--SLIKPYQGVGSSSMPLWDFQGSTMLTSQYVRLTPDERSKEGSIWNHQPCFLKDW 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE4 EVEVTFRVTGRGR--IGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDND--GKK :..: :.: : :. . .::.:.::.... . :::::: : ..:..::.:.. :: .. NP_006 EMHVHFKVHGTGKKNLHGDGIALWYTRDRLVPGPVFGSKDNFHGLAIFLDTYPNDETTER 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE4 NNPAIVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGF : : .. :::.. :::..:: ::.: ::::. . . . : .. :::: . NP_006 VFPYISVMVNNGSLSYDHSKDGRWTELAGCTADFRNRDHDTFLAVRYSRGRLTVMTD--- 180 190 200 210 220 230 240 250 260 270 280 pF1KE4 TPDKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKE :::... : . .. .:. .:: ::.:: :.:.::..:. ::: :::.: NP_006 LEDKNEWKNCIDITGVRLPTGYYFGASAGTGDLSDNHDIISMKLFQLMV----EHTPDEE 230 240 250 260 270 280 290 300 310 320 330 pF1KE4 ISEKEKEKYQEEF-EHFQQELDKKKEEFQKGHPDLQGQPAEEIFESVGDRELRQVFEGQN . : . . .: . ....: .:..: NP_006 SIDWTKIEPSVNFLKSPKDNVDDPTGNFRSGPLTGWRVFLLLLCALLGIVVCAVVGAVVF 290 300 310 320 330 340 340 350 360 370 380 390 pF1KE4 RIHLEIKQLNRQLDMILDEQRRYVSSLTEEISKRGAGMPGQHGQITQQELDTVVKTQHEI NP_006 QKRQERNKRFY 350 >>NP_110432 (OMIM: 609552,616887) VIP36-like protein iso (348 aa) initn: 265 init1: 180 opt: 528 Z-score: 460.4 bits: 94.2 E(85289): 6.6e-19 Smith-Waterman score: 528; 33.6% identity (62.7% similar) in 271 aa overlap (6-268:15-275) 10 20 30 40 pF1KE4 MAGSRQRGLRARVRPLFCALLLSLGRFVRGDGVGGDPAVALPHRRFEY--- .: : :: . ::: :: :.: : . . ::: NP_110 MAATLGPLGSWQQWRRCLSARDGSRMLLLLLLLGS---GQG----PQQVGAGQTFEYLKR 10 20 30 40 50 50 60 70 80 90 100 pF1KE4 KYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEV ..:.. :. . :. .: :::. .. ::..:...:..:..:... ...::..: NP_110 EHSLSKPYQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQV 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE4 TFRVTGRGR--IGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNN---P :.. :.:. . .:::::::.... :::::. : . :.:.: :.. :. :... : NP_110 HFKIHGQGKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQERVFP 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE4 AIVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPD : . :::.. :::. :: :..: :: : . : : . ::.:.. NP_110 YISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMD---IDG 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE4 KNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISE :.... : .: .. .: .:: :. :: :.:.:::.:. :.:: NP_110 KHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDVF 240 250 260 270 280 290 290 300 310 320 330 340 pF1KE4 KEKEKYQEEFEHFQQELDKKKEEFQKGHPDLQGQPAEEIFESVGDRELRQVFEGQNRIHL NP_110 LPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY 300 310 320 330 340 >>NP_001135764 (OMIM: 609552,616887) VIP36-like protein (359 aa) initn: 433 init1: 142 opt: 319 Z-score: 283.6 bits: 61.5 E(85289): 4.6e-09 Smith-Waterman score: 506; 32.3% identity (60.3% similar) in 282 aa overlap (6-268:15-286) 10 20 30 40 pF1KE4 MAGSRQRGLRARVRPLFCALLLSLGRFVRGDGVGGDPAVALPHRRFEY--- .: : :: . ::: :: :.: : . . ::: NP_001 MAATLGPLGSWQQWRRCLSARDGSRMLLLLLLLGS---GQG----PQQVGAGQTFEYLKR 10 20 30 40 50 50 60 70 80 90 100 pF1KE4 KYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEV ..:.. :. . :. .: :::. .. ::..:...:..:..:... ...::..: NP_001 EHSLSKPYQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQV 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE4 TFRVTGRGR--IGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNN---- :.. :.:. . .:::::::.... :::::. : . :.:.: :.. :. :... NP_001 HFKIHGQGKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQEAQKR 120 130 140 150 160 170 170 180 190 200 210 pF1KE4 ----------PAIVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTL : : . :::.. :::. :: :..: :: : . : : . : NP_001 RYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHL 180 190 200 210 220 230 220 230 240 250 260 270 pF1KE4 TVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGK :.:.. :.... : .: .. .: .:: :. :: :.:.:::.:. :.:: NP_001 TIMMD---IDGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERT 240 250 260 270 280 290 280 290 300 310 320 330 pF1KE4 EPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKGHPDLQGQPAEEIFESVGDRELR NP_001 PEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYNKW 300 310 320 330 340 350 >>NP_001309279 (OMIM: 609552,616887) VIP36-like protein (210 aa) initn: 253 init1: 114 opt: 306 Z-score: 275.9 bits: 59.3 E(85289): 1.2e-08 Smith-Waterman score: 306; 36.5% identity (62.8% similar) in 137 aa overlap (135-268:4-137) 110 120 130 140 150 160 pF1KE4 EVEVTFRVTGRGRIGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNN-- :::::. : . :.:.: :.. :. :... NP_001 MQPGPVFGNMDKFVGLGVFVDTYPNEEKQQERV 10 20 30 170 180 190 200 210 220 pF1KE4 -PAIVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFT : : . :::.. :::. :: :..: :: : . : : . ::.:.. NP_001 FPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMD---I 40 50 60 70 80 90 230 240 250 260 270 280 pF1KE4 PDKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEI :.... : .: .. .: .:: :. :: :.:.:::.:. :.:: NP_001 DGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRD 100 110 120 130 140 150 290 300 310 320 330 340 pF1KE4 SEKEKEKYQEEFEHFQQELDKKKEEFQKGHPDLQGQPAEEIFESVGDRELRQVFEGQNRI NP_001 VFLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY 160 170 180 190 200 210 >>NP_001309280 (OMIM: 609552,616887) VIP36-like protein (203 aa) initn: 220 init1: 114 opt: 225 Z-score: 207.7 bits: 46.7 E(85289): 7.8e-05 Smith-Waterman score: 225; 35.8% identity (60.4% similar) in 106 aa overlap (163-268:28-130) 140 150 160 170 180 190 pF1KE4 LEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASCQR : : . :::.. :::. :: :..: NP_001 MDKERRICMGMAWQSGTQRIGCSQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTA 10 20 30 40 50 200 210 220 230 240 250 pF1KE4 DFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGG :: : . : : . ::.:.. :.... : .: .. .: .:: :. :: NP_001 IVRNLHYDTFLVIRYVKRHLTIMMD---IDGKHEWRDCIEVPGVRLPRGYYFGTSSITGD 60 70 80 90 100 110 260 270 280 290 300 310 pF1KE4 LADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKGHP :.:.:::.:. :.:: NP_001 LSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIVF 120 130 140 150 160 170 >>NP_001309284 (OMIM: 609552,616887) VIP36-like protein (203 aa) initn: 220 init1: 114 opt: 225 Z-score: 207.7 bits: 46.7 E(85289): 7.8e-05 Smith-Waterman score: 225; 35.8% identity (60.4% similar) in 106 aa overlap (163-268:28-130) 140 150 160 170 180 190 pF1KE4 LEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASCQR : : . :::.. :::. :: :..: NP_001 MDKERRICMGMAWQSGTQRIGCSQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTA 10 20 30 40 50 200 210 220 230 240 250 pF1KE4 DFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGG :: : . : : . ::.:.. :.... : .: .. .: .:: :. :: NP_001 IVRNLHYDTFLVIRYVKRHLTIMMD---IDGKHEWRDCIEVPGVRLPRGYYFGTSSITGD 60 70 80 90 100 110 260 270 280 290 300 310 pF1KE4 LADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKGHP :.:.:::.:. :.:: NP_001 LSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIVF 120 130 140 150 160 170 >>NP_001309285 (OMIM: 609552,616887) VIP36-like protein (203 aa) initn: 220 init1: 114 opt: 225 Z-score: 207.7 bits: 46.7 E(85289): 7.8e-05 Smith-Waterman score: 225; 35.8% identity (60.4% similar) in 106 aa overlap (163-268:28-130) 140 150 160 170 180 190 pF1KE4 LEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASCQR : : . :::.. :::. :: :..: NP_001 MDKERRICMGMAWQSGTQRIGCSQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTA 10 20 30 40 50 200 210 220 230 240 250 pF1KE4 DFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGG :: : . : : . ::.:.. :.... : .: .. .: .:: :. :: NP_001 IVRNLHYDTFLVIRYVKRHLTIMMD---IDGKHEWRDCIEVPGVRLPRGYYFGTSSITGD 60 70 80 90 100 110 260 270 280 290 300 310 pF1KE4 LADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKGHP :.:.:::.:. :.:: NP_001 LSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIVF 120 130 140 150 160 170 >>NP_001309275 (OMIM: 609552,616887) VIP36-like protein (214 aa) initn: 220 init1: 114 opt: 225 Z-score: 207.4 bits: 46.7 E(85289): 8.2e-05 Smith-Waterman score: 225; 35.8% identity (60.4% similar) in 106 aa overlap (163-268:39-141) 140 150 160 170 180 190 pF1KE4 LEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASCQR : : . :::.. :::. :: :..: NP_001 MGMAWQSGTQRIGCSQAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTA 10 20 30 40 50 60 200 210 220 230 240 250 pF1KE4 DFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGG :: : . : : . ::.:.. :.... : .: .. .: .:: :. :: NP_001 IVRNLHYDTFLVIRYVKRHLTIMMD---IDGKHEWRDCIEVPGVRLPRGYYFGTSSITGD 70 80 90 100 110 120 260 270 280 290 300 310 pF1KE4 LADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKGHP :.:.:::.:. :.:: NP_001 LSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIVF 130 140 150 160 170 180 510 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 00:48:32 2016 done: Sun Nov 6 00:48:33 2016 Total Scan time: 9.990 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]