Result of FASTA (omim) for pFN21AE3948
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3948, 359 aa
  1>>>pF1KE3948 359 - 359 aa - 359 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2389+/-0.000301; mu= 18.2816+/- 0.019
 mean_var=77.7666+/-15.869, 0's: 0 Z-trim(118.4): 42  B-trim: 1358 in 1/53
 Lambda= 0.145438
 statistics sampled from 31339 (31387) to 31339 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.368), width:  16
 Scan time:  8.700

The best scores are:                                      opt bits E(85289)
NP_000277 (OMIM: 266510,601758,614859) peroxisome  ( 359) 2414 515.5 7.5e-146


>>NP_000277 (OMIM: 266510,601758,614859) peroxisome asse  (359 aa)
 initn: 2414 init1: 2414 opt: 2414  Z-score: 2739.5  bits: 515.5 E(85289): 7.5e-146
Smith-Waterman score: 2414; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359)

               10        20        30        40        50        60
pF1KE3 MAEHGAHFTAASVADDQPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPTHYGFLWRWFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAEHGAHFTAASVADDQPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPTHYGFLWRWFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EIFTLLDLLLQQHYLSRTSASFSENFYGLKRIVMGDTHKSQRLASAGLPKQQLWKSIMFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EIFTLLDLLLQQHYLSRTSASFSENFYGLKRIVMGDTHKSQRLASAGLPKQQLWKSIMFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VLLPYLKVKLEKLVSSLREEDEYSIHPPSSRWKRFYRAFLAAYPFVNMAWEGWFLVQQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VLLPYLKVKLEKLVSSLREEDEYSIHPPSSRWKRFYRAFLAAYPFVNMAWEGWFLVQQLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 YILGKAQHHSPLLRLAGVQLGRLTVQDIQALEHKPAKASMMQQPARSVSEKINSALKKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YILGKAQHHSPLLRLAGVQLGRLTVQDIQALEHKPAKASMMQQPARSVSEKINSALKKAV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 GGVALSLSTGLSVGVFFLQFLDWWYSSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GGVALSLSTGLSVGVFFLQFLDWWYSSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKM
              250       260       270       280       290       300

              310       320       330       340       350         
pF1KE3 KTVCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPTEVQHLIKLYSPEN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KTVCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPTEVQHLIKLYSPEN
              310       320       330       340       350         




359 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:40:42 2016 done: Sun Nov  6 08:40:43 2016
 Total Scan time:  8.700 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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