FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3948, 359 aa
  1>>>pF1KE3948 359 - 359 aa - 359 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4771+/-0.000717; mu= 16.7641+/- 0.044
 mean_var=77.5577+/-15.542, 0's: 0 Z-trim(110.6): 31  B-trim: 0 in 0/51
 Lambda= 0.145634
 statistics sampled from 11689 (11708) to 11689 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.36), width:  16
 Scan time:  2.990

The best scores are:                                      opt bits E(32554)
CCDS11296.1 PEX12 gene_id:5193|Hs108|chr17         ( 359) 2414 516.2 1.7e-146


>>CCDS11296.1 PEX12 gene_id:5193|Hs108|chr17              (359 aa)
 initn: 2414 init1: 2414 opt: 2414  Z-score: 2743.4  bits: 516.2 E(32554): 1.7e-146
Smith-Waterman score: 2414; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359)

               10        20        30        40        50        60
pF1KE3 MAEHGAHFTAASVADDQPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPTHYGFLWRWFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAEHGAHFTAASVADDQPSIFEVVAQDSLMTAVRPALQHVVKVLAESNPTHYGFLWRWFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EIFTLLDLLLQQHYLSRTSASFSENFYGLKRIVMGDTHKSQRLASAGLPKQQLWKSIMFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EIFTLLDLLLQQHYLSRTSASFSENFYGLKRIVMGDTHKSQRLASAGLPKQQLWKSIMFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VLLPYLKVKLEKLVSSLREEDEYSIHPPSSRWKRFYRAFLAAYPFVNMAWEGWFLVQQLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VLLPYLKVKLEKLVSSLREEDEYSIHPPSSRWKRFYRAFLAAYPFVNMAWEGWFLVQQLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 YILGKAQHHSPLLRLAGVQLGRLTVQDIQALEHKPAKASMMQQPARSVSEKINSALKKAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YILGKAQHHSPLLRLAGVQLGRLTVQDIQALEHKPAKASMMQQPARSVSEKINSALKKAV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 GGVALSLSTGLSVGVFFLQFLDWWYSSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GGVALSLSTGLSVGVFFLQFLDWWYSSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKM
              250       260       270       280       290       300

              310       320       330       340       350         
pF1KE3 KTVCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPTEVQHLIKLYSPEN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KTVCPLCRKTRVNDTVLATSGYVFCYRCVFHYVRSHQACPITGYPTEVQHLIKLYSPEN
              310       320       330       340       350         




359 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 08:40:41 2016 done: Sun Nov  6 08:40:42 2016
 Total Scan time:  2.990 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]