Result of FASTA (omim) for
pFN21AB6512
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6512, 384 aa
1>>>pF1KB6512 384 - 384 aa - 384 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7807+/-0.000331; mu= 20.3317+/- 0.021
mean_var=71.9465+/-14.048, 0's: 0 Z-trim(115.4): 64 B-trim: 0 in 0/52
Lambda= 0.151206
statistics sampled from 25769 (25837) to 25769 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.303), width: 16
Scan time: 9.220
The best scores are: opt bits E(85289)
NP_598193 (OMIM: 602948) DNA repair protein RAD51 ( 384) 2476 549.2 5.9e-156
NP_001308750 (OMIM: 602948) DNA repair protein RAD ( 425) 2203 489.7 5.4e-138
NP_001308747 (OMIM: 602948) DNA repair protein RAD ( 347) 2193 487.4 2.1e-137
NP_001308739 (OMIM: 602948) DNA repair protein RAD ( 347) 2193 487.4 2.1e-137
NP_001308738 (OMIM: 602948) DNA repair protein RAD ( 347) 2193 487.4 2.1e-137
NP_001308748 (OMIM: 602948) DNA repair protein RAD ( 348) 2193 487.4 2.1e-137
NP_598194 (OMIM: 602948) DNA repair protein RAD51 ( 350) 2193 487.4 2.1e-137
NP_002868 (OMIM: 602948) DNA repair protein RAD51 ( 350) 2193 487.4 2.1e-137
NP_001308741 (OMIM: 602948) DNA repair protein RAD ( 351) 2193 487.4 2.1e-137
NP_001308743 (OMIM: 602948) DNA repair protein RAD ( 351) 2193 487.4 2.1e-137
NP_001308744 (OMIM: 602948) DNA repair protein RAD ( 332) 1957 435.9 6.4e-122
XP_011535352 (OMIM: 602948) PREDICTED: DNA repair ( 274) 1626 363.7 3e-100
XP_011535353 (OMIM: 602948) PREDICTED: DNA repair ( 258) 1618 361.9 9.8e-100
XP_016877034 (OMIM: 602948) PREDICTED: DNA repair ( 500) 1618 362.1 1.6e-99
XP_016877036 (OMIM: 602948) PREDICTED: DNA repair ( 306) 1397 313.7 3.6e-85
NP_001308746 (OMIM: 602948) DNA repair protein RAD ( 231) 1387 311.4 1.3e-84
XP_016877035 (OMIM: 602948) PREDICTED: DNA repair ( 324) 953 216.9 5.4e-56
XP_016877037 (OMIM: 602948) PREDICTED: DNA repair ( 181) 587 136.8 3.8e-32
NP_001093588 (OMIM: 114480,600675,613972) DNA repa ( 346) 315 77.8 4.4e-14
XP_011535440 (OMIM: 114480,600675,613972) PREDICTE ( 346) 315 77.8 4.4e-14
XP_005268103 (OMIM: 114480,600675,613972) PREDICTE ( 346) 315 77.8 4.4e-14
NP_001093589 (OMIM: 114480,600675,613972) DNA repa ( 346) 315 77.8 4.4e-14
NP_005423 (OMIM: 114480,600675,613972) DNA repair ( 346) 315 77.8 4.4e-14
NP_008999 (OMIM: 602721) meiotic recombination pro ( 340) 314 77.5 5.1e-14
XP_011528136 (OMIM: 602721) PREDICTED: meiotic rec ( 362) 314 77.6 5.3e-14
XP_011528137 (OMIM: 602721) PREDICTED: meiotic rec ( 362) 314 77.6 5.3e-14
NP_002869 (OMIM: 602954,614291) DNA repair protein ( 328) 311 76.9 7.8e-14
XP_011520163 (OMIM: 114480,179617,614508) PREDICTE ( 280) 260 65.7 1.6e-10
NP_001157742 (OMIM: 114480,179617,614508) DNA repa ( 280) 260 65.7 1.6e-10
XP_011520159 (OMIM: 114480,179617,614508) PREDICTE ( 339) 260 65.8 1.8e-10
XP_006720689 (OMIM: 114480,179617,614508) PREDICTE ( 339) 260 65.8 1.8e-10
XP_011520161 (OMIM: 114480,179617,614508) PREDICTE ( 339) 260 65.8 1.8e-10
XP_011520162 (OMIM: 114480,179617,614508) PREDICTE ( 339) 260 65.8 1.8e-10
NP_002866 (OMIM: 114480,179617,614508) DNA repair ( 339) 260 65.8 1.8e-10
XP_011520160 (OMIM: 114480,179617,614508) PREDICTE ( 339) 260 65.8 1.8e-10
NP_001136043 (OMIM: 602954,614291) DNA repair prot ( 348) 250 63.6 8.3e-10
NP_597994 (OMIM: 114480,179617,614508) DNA repair ( 340) 235 60.3 7.8e-09
NP_001157741 (OMIM: 114480,179617,614508) DNA repa ( 340) 235 60.3 7.8e-09
XP_006722065 (OMIM: 189960,602774,613390,613399) P ( 342) 233 59.9 1.1e-08
NP_478123 (OMIM: 189960,602774,613390,613399) DNA ( 376) 233 59.9 1.1e-08
XP_006722064 (OMIM: 189960,602774,613390,613399) P ( 377) 233 59.9 1.1e-08
NP_005422 (OMIM: 600375) DNA repair protein XRCC2 ( 280) 184 49.1 1.5e-05
XP_016880408 (OMIM: 189960,602774,613390,613399) P ( 225) 182 48.6 1.8e-05
XP_016880403 (OMIM: 189960,602774,613390,613399) P ( 259) 182 48.6 1.9e-05
XP_016880406 (OMIM: 189960,602774,613390,613399) P ( 259) 182 48.6 1.9e-05
XP_016880407 (OMIM: 189960,602774,613390,613399) P ( 259) 182 48.6 1.9e-05
XP_016880404 (OMIM: 189960,602774,613390,613399) P ( 259) 182 48.6 1.9e-05
XP_016880405 (OMIM: 189960,602774,613390,613399) P ( 259) 182 48.6 1.9e-05
XP_011523394 (OMIM: 189960,602774,613390,613399) P ( 260) 182 48.6 2e-05
XP_006722068 (OMIM: 189960,602774,613390,613399) P ( 260) 182 48.6 2e-05
>>NP_598193 (OMIM: 602948) DNA repair protein RAD51 homo (384 aa)
initn: 2476 init1: 2476 opt: 2476 Z-score: 2920.9 bits: 549.2 E(85289): 5.9e-156
Smith-Waterman score: 2476; 100.0% identity (100.0% similar) in 384 aa overlap (1-384:1-384)
10 20 30 40 50 60
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWA
310 320 330 340 350 360
370 380
pF1KB6 PEILPPQPPEQLGLQMCHHTQLIF
::::::::::::::::::::::::
NP_598 PEILPPQPPEQLGLQMCHHTQLIF
370 380
>>NP_001308750 (OMIM: 602948) DNA repair protein RAD51 h (425 aa)
initn: 2193 init1: 2193 opt: 2203 Z-score: 2598.5 bits: 489.7 E(85289): 5.4e-138
Smith-Waterman score: 2203; 94.9% identity (95.9% similar) in 369 aa overlap (1-368:1-369)
10 20 30 40 50 60
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
250 260 270 280 290 300
310 320 330 340 350
pF1KB6 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQET-TFCSVTQAELNW
::::::::::::::::::::::::::::::::::::::::::::: . : :. :
NP_001 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQVVRTVARVSPRSECW
310 320 330 340 350 360
360 370 380
pF1KB6 APEILPPQPPEQLGLQMCHHTQLIF
. :.:
NP_001 SAADSHPSPTFLIPDVVLRKTRNPRLLPSVSMCPPQMHSTVLSSALPPTNWATGIRTETL
370 380 390 400 410 420
>>NP_001308747 (OMIM: 602948) DNA repair protein RAD51 h (347 aa)
initn: 2193 init1: 2193 opt: 2193 Z-score: 2587.8 bits: 487.4 E(85289): 2.1e-137
Smith-Waterman score: 2193; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWA
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQGQ
310 320 330 340
370 380
pF1KB6 PEILPPQPPEQLGLQMCHHTQLIF
>>NP_001308739 (OMIM: 602948) DNA repair protein RAD51 h (347 aa)
initn: 2193 init1: 2193 opt: 2193 Z-score: 2587.8 bits: 487.4 E(85289): 2.1e-137
Smith-Waterman score: 2193; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWA
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQGL
310 320 330 340
370 380
pF1KB6 PEILPPQPPEQLGLQMCHHTQLIF
>>NP_001308738 (OMIM: 602948) DNA repair protein RAD51 h (347 aa)
initn: 2193 init1: 2193 opt: 2193 Z-score: 2587.8 bits: 487.4 E(85289): 2.1e-137
Smith-Waterman score: 2193; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWA
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQGL
310 320 330 340
370 380
pF1KB6 PEILPPQPPEQLGLQMCHHTQLIF
>>NP_001308748 (OMIM: 602948) DNA repair protein RAD51 h (348 aa)
initn: 2193 init1: 2193 opt: 2193 Z-score: 2587.8 bits: 487.4 E(85289): 2.1e-137
Smith-Waterman score: 2193; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWA
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQAGK
310 320 330 340
370 380
pF1KB6 PEILPPQPPEQLGLQMCHHTQLIF
>>NP_598194 (OMIM: 602948) DNA repair protein RAD51 homo (350 aa)
initn: 2193 init1: 2193 opt: 2193 Z-score: 2587.8 bits: 487.4 E(85289): 2.1e-137
Smith-Waterman score: 2193; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_598 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWA
:::::::::::::::::::::::::::::::::::::::::::::
NP_598 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQGQEKP
310 320 330 340 350
370 380
pF1KB6 PEILPPQPPEQLGLQMCHHTQLIF
>>NP_002868 (OMIM: 602948) DNA repair protein RAD51 homo (350 aa)
initn: 2193 init1: 2193 opt: 2193 Z-score: 2587.8 bits: 487.4 E(85289): 2.1e-137
Smith-Waterman score: 2193; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWA
:::::::::::::::::::::::::::::::::::::::::::::
NP_002 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQAYGNS
310 320 330 340 350
370 380
pF1KB6 PEILPPQPPEQLGLQMCHHTQLIF
>>NP_001308741 (OMIM: 602948) DNA repair protein RAD51 h (351 aa)
initn: 2193 init1: 2193 opt: 2193 Z-score: 2587.7 bits: 487.4 E(85289): 2.1e-137
Smith-Waterman score: 2193; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWA
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQGSREFK
310 320 330 340 350
370 380
pF1KB6 PEILPPQPPEQLGLQMCHHTQLIF
>>NP_001308743 (OMIM: 602948) DNA repair protein RAD51 h (351 aa)
initn: 2193 init1: 2193 opt: 2193 Z-score: 2587.7 bits: 487.4 E(85289): 2.1e-137
Smith-Waterman score: 2193; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWA
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQGSREFK
310 320 330 340 350
370 380
pF1KB6 PEILPPQPPEQLGLQMCHHTQLIF
384 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:06:46 2016 done: Sat Nov 5 08:06:47 2016
Total Scan time: 9.220 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]