Result of FASTA (ccds) for
pFN21AB6512
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6512, 384 aa
1>>>pF1KB6512 384 - 384 aa - 384 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4957+/-0.000773; mu= 15.9020+/- 0.047
mean_var=66.1879+/-13.063, 0's: 0 Z-trim(108.1): 22 B-trim: 84 in 1/50
Lambda= 0.157647
statistics sampled from 9966 (9986) to 9966 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.307), width: 16
Scan time: 2.700
The best scores are: opt bits E(32554)
CCDS9789.1 RAD51B gene_id:5890|Hs108|chr14 ( 384) 2476 571.8 3.6e-163
CCDS81815.1 RAD51B gene_id:5890|Hs108|chr14 ( 425) 2203 509.7 1.9e-144
CCDS9790.1 RAD51B gene_id:5890|Hs108|chr14 ( 350) 2193 507.4 7.9e-144
CCDS9984.1 XRCC3 gene_id:7517|Hs108|chr14 ( 346) 315 80.3 3e-15
CCDS13973.1 DMC1 gene_id:11144|Hs108|chr22 ( 340) 314 80.0 3.4e-15
CCDS11287.1 RAD51D gene_id:5892|Hs108|chr17 ( 328) 311 79.4 5.3e-15
CCDS53932.1 RAD51 gene_id:5888|Hs108|chr15 ( 280) 260 67.7 1.4e-11
CCDS10062.1 RAD51 gene_id:5888|Hs108|chr15 ( 339) 260 67.8 1.7e-11
CCDS45646.1 RAD51D gene_id:5892|Hs108|chr17 ( 348) 250 65.5 8.4e-11
>>CCDS9789.1 RAD51B gene_id:5890|Hs108|chr14 (384 aa)
initn: 2476 init1: 2476 opt: 2476 Z-score: 3042.9 bits: 571.8 E(32554): 3.6e-163
Smith-Waterman score: 2476; 100.0% identity (100.0% similar) in 384 aa overlap (1-384:1-384)
10 20 30 40 50 60
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWA
310 320 330 340 350 360
370 380
pF1KB6 PEILPPQPPEQLGLQMCHHTQLIF
::::::::::::::::::::::::
CCDS97 PEILPPQPPEQLGLQMCHHTQLIF
370 380
>>CCDS81815.1 RAD51B gene_id:5890|Hs108|chr14 (425 aa)
initn: 2193 init1: 2193 opt: 2203 Z-score: 2706.6 bits: 509.7 E(32554): 1.9e-144
Smith-Waterman score: 2203; 94.9% identity (95.9% similar) in 369 aa overlap (1-368:1-369)
10 20 30 40 50 60
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
250 260 270 280 290 300
310 320 330 340 350
pF1KB6 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQET-TFCSVTQAELNW
::::::::::::::::::::::::::::::::::::::::::::: . : :. :
CCDS81 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQVVRTVARVSPRSECW
310 320 330 340 350 360
360 370 380
pF1KB6 APEILPPQPPEQLGLQMCHHTQLIF
. :.:
CCDS81 SAADSHPSPTFLIPDVVLRKTRNPRLLPSVSMCPPQMHSTVLSSALPPTNWATGIRTETL
370 380 390 400 410 420
>>CCDS9790.1 RAD51B gene_id:5890|Hs108|chr14 (350 aa)
initn: 2193 init1: 2193 opt: 2193 Z-score: 2695.7 bits: 507.4 E(32554): 7.9e-144
Smith-Waterman score: 2193; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 APKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 RELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREAS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWA
:::::::::::::::::::::::::::::::::::::::::::::
CCDS97 SHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQGQEKP
310 320 330 340 350
370 380
pF1KB6 PEILPPQPPEQLGLQMCHHTQLIF
>>CCDS9984.1 XRCC3 gene_id:7517|Hs108|chr14 (346 aa)
initn: 282 init1: 164 opt: 315 Z-score: 387.4 bits: 80.3 E(32554): 3e-15
Smith-Waterman score: 339; 27.4% identity (57.0% similar) in 351 aa overlap (6-342:3-337)
10 20 30 40 50
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVS-RA
: . :. .. ... .. . .. : .: .: ..:.:: : .:: .: .
CCDS99 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHL
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 CAPKMQTAYGIKAQRSA-DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFC
. .. :: .. :. . :: .:: :.::. ..::..: . ::::.
CCDS99 RGSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 IMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTS----
... . . .: . ::::...::: ::.:: .:: .. .. :: . :: .
CCDS99 LQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQ-PRLRTDVPGELLQKLRFG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB6 SKVHLYRELTCDEVLQRIESLEEEIISKGI-KLVILDSVASVVRKEFDAQLQGNLKERNK
:.. . . : .:. ... ..:.:. .::..::::. : :::.: .. : .
CCDS99 SQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASA---PRAR
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB6 FLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVI
: ...:. :. :. ::. ::.: :. :. .: :.. . :
CCDS99 HLQSLGATLRELSSAFQSPVLCINQVTE----AMEEQGAAHGP---LGFWDER-----VS
240 250 260 270 280
300 310 320 330 340
pF1KB6 AALGNTWSHSVNTRLILQYLDSER-------RQILIAKSPLAPFTSFVYTIKEEGLVLQE
::: ::.... .::. . : :. : . . ..: : .: :::. ::.
CCDS99 PALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRGTP
290 300 310 320 330 340
350 360 370 380
pF1KB6 TTFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF
CCDS99 GTQSH
>>CCDS13973.1 DMC1 gene_id:11144|Hs108|chr22 (340 aa)
initn: 256 init1: 137 opt: 314 Z-score: 386.3 bits: 80.0 E(32554): 3.4e-15
Smith-Waterman score: 323; 26.3% identity (54.3% similar) in 339 aa overlap (6-342:27-335)
10 20 30
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELM
:.. :.. .:. : : . . . :
CCDS13 MKEDQVVAEEPGFQDEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 KVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVA
.: ::: : .. ... : . ::. . .:. : ..: . .:. : ::.
CCDS13 NVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKRKMVFH---ITTGSQEFDKLLGGGIE
70 80 90 100 110
100 110 120 130 140 150
pF1KB6 CGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESR
..:: : ::::. . . : :: : : ...::::..: .:: .::.
CCDS13 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIAD--
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB6 FPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISK-GI-KLVILDSVASVVR
::... .: . : : : .. .. .. . .. . :: ::.:.::. .. :
CCDS13 ---RFNVDHDAVLDN--VLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB6 KEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPA
.:... :.: ::.. ::. : :. ..::... :..:::.:. ..... ::: .:
CCDS13 VDFSGR--GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPI
240 250 260 270 280
280 290 300 310 320 330
pF1KB6 DDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTI
:. .:. .::. :. .: : : :: : . ...:
CCDS13 G------------------GHILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAI
290 300 310 320 330
340 350 360 370 380
pF1KB6 KEEGLVLQETTFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF
:.
CCDS13 TAGGIGDAKE
340
>>CCDS11287.1 RAD51D gene_id:5892|Hs108|chr17 (328 aa)
initn: 257 init1: 131 opt: 311 Z-score: 382.8 bits: 79.4 E(32554): 5.3e-15
Smith-Waterman score: 321; 28.6% identity (56.8% similar) in 336 aa overlap (10-333:11-305)
10 20 30 40 50
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHEL--LCMVS
::..:. . : :.: : :.. . :. . ::::... : . ...
CCDS11 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 RACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQF
. : . : . : :.::: ...::. : .:. : .:::.: :: ::::
CCDS11 FSAFP----VNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQV
70 80 90 100 110
120 130 140 150 160 170
pF1KB6 CIMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSK
:. :. .:.. ::. :.:.:......: ::... ... . : : .
CCDS11 CLCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQV-
120 130 140 150 160
180 190 200 210 220 230
pF1KB6 VHLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVRKEFDAQLQGNLKERNK
:: . . .:::... .. ... :.: .:.:..:::..:: . : :. .:
CCDS11 VHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLA
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB6 FLAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSPADDLSLSEGTSGSSCV
.. . : :: ::..... :..::.:: :: : .::
CCDS11 LMMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KPA---------------
230 240 250 260
300 310 320 330 340
pF1KB6 IAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFTSFVYTIKEEGLVLQET
:: .:: .::..:. ... ::. .::: : :.:
CCDS11 ---LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWGTSEQ
270 280 290 300 310
350 360 370 380
pF1KB6 TFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF
CCDS11 SATLQGDQT
320
>>CCDS53932.1 RAD51 gene_id:5888|Hs108|chr15 (280 aa)
initn: 211 init1: 211 opt: 260 Z-score: 321.2 bits: 67.7 E(32554): 1.4e-11
Smith-Waterman score: 290; 27.9% identity (57.4% similar) in 244 aa overlap (5-248:27-258)
10 20 30
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLEL
.:.. :.. . .: . . : . ::
CCDS53 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 MKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGV
... :.: . ..: ... . :: .. .:: .. ..: . ::. :.::.
CCDS53 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQ---ITTGSKELDKLLQGGI
70 80 90 100 110
100 110 120 130 140 150
pF1KB6 ACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAES
::.::. : ::::.: ... :: . :: :: ..:::::..: :::. .::
CCDS53 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE-
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB6 RFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRK
:: . .: ..: : .. :. : . . .. . :.:.::.... :
CCDS53 ---RYGLSGSDVL---DNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB6 EFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPAD
.... .:.:. :. ::: : ::.:
CCDS53 DYSG--RGELSARQMHLARFLRMLLRLADEIVSEERKRGNQNLQNLRLSLSS
240 250 260 270 280
>>CCDS10062.1 RAD51 gene_id:5888|Hs108|chr15 (339 aa)
initn: 356 init1: 211 opt: 260 Z-score: 319.9 bits: 67.8 E(32554): 1.7e-11
Smith-Waterman score: 386; 27.5% identity (55.6% similar) in 338 aa overlap (5-342:27-334)
10 20 30
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLEL
.:.. :.. . .: . . : . ::
CCDS10 MAMQMQLEANADTSVEEESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKEL
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB6 MKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSADFSPAFLSTTLSALDEALHGGV
... :.: . ..: ... . :: .. .:: .. ..: . ::. :.::.
CCDS10 INIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQ---ITTGSKELDKLLQGGI
70 80 90 100 110
100 110 120 130 140 150
pF1KB6 ACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAES
::.::. : ::::.: ... :: . :: :: ..:::::..: :::. .::
CCDS10 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE-
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB6 RFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIESLEEEIISKGIKLVILDSVASVVRK
:: . .: ..: : .. :. : . . .. . :.:.::.... :
CCDS10 ---RYGLSGSDVL---DNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB6 EFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPAD
..... :.:. :. ::: : ::.::.. :..:::......:: :: .:
CCDS10 DYSGR--GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIG
240 250 260 270 280
280 290 300 310 320 330
pF1KB6 DLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIK
:: .:. .::: :. .: : : :: : . ...:.
CCDS10 ------------------GNIIAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAMFAIN
290 300 310 320 330
340 350 360 370 380
pF1KB6 EEGLVLQETTFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF
.:.
CCDS10 ADGVGDAKD
>>CCDS45646.1 RAD51D gene_id:5892|Hs108|chr17 (348 aa)
initn: 262 init1: 115 opt: 250 Z-score: 307.4 bits: 65.5 E(32554): 8.4e-11
Smith-Waterman score: 282; 27.6% identity (55.1% similar) in 352 aa overlap (10-333:11-325)
10 20 30 40 50
pF1KB6 MGSKKLKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRG--VHEL--LCM
::..:. . : :.: : :.. . :. . ::::. .: :
CCDS45 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGG
10 20 30 40 50 60
60 70 80 90 100
pF1KB6 VSRACAPKMQTAYGIK-AQRSADFSP---------AF----LSTTLSALDEALHGGVACG
.. .: .. :.. : ..: .. :: ... : ::. : .:. :
CCDS45 LQLPQVPAGRSWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTG
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB6 SLTEITGPPGCGKTQFCIMMSILATLPTNMG-GLEGAVVYIDTESAFSAERLVEIAESRF
.:::.: :: :::: :. :. .:.. ::. :.:.:......: ::... ...
CCDS45 EVTEIVGGPGSGKTQVCLCMA------ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKT
130 140 150 160 170
170 180 190 200 210
pF1KB6 PRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIE-SLEEEII-SKG-IKLVILDSVASVVR
. : : . :: . . .:::... .. ... :.: .:.:..:::..::
CCDS45 QDEEEQAEALRRIQV-VHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV-
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB6 KEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHL-SGALASQADLVSP
. : :. .: .. . : :: ::..... :..::.:: :: : .:
CCDS45 ---SPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRL-------KP
240 250 260 270 280
280 290 300 310 320 330
pF1KB6 ADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFT
: :: .:: .::..:. ... ::. .::: : :
CCDS45 A------------------LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-T
290 300 310 320
340 350 360 370 380
pF1KB6 SFVYTIKEEGLVLQETTFCSVTQAELNWAPEILPPQPPEQLGLQMCHHTQLIF
.:
CCDS45 GFQEMVDIGTWGTSEQSATLQGDQT
330 340
384 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:06:45 2016 done: Sat Nov 5 08:06:45 2016
Total Scan time: 2.700 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]