FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6151, 97 aa 1>>>pF1KE6151 97 - 97 aa - 97 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6669+/-0.000252; mu= 13.2760+/- 0.016 mean_var=57.9789+/-11.660, 0's: 0 Z-trim(122.2): 10 B-trim: 385 in 1/51 Lambda= 0.168438 statistics sampled from 40004 (40015) to 40004 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.469), width: 16 Scan time: 4.220 The best scores are: opt bits E(85289) NP_005196 (OMIM: 602009) cytochrome c oxidase subu ( 97) 699 176.6 5.6e-45 NP_004364 (OMIM: 602072,616039) cytochrome c oxida ( 109) 388 101.0 3.5e-22 >>NP_005196 (OMIM: 602009) cytochrome c oxidase subunit (97 aa) initn: 699 init1: 699 opt: 699 Z-score: 928.4 bits: 176.6 E(85289): 5.6e-45 Smith-Waterman score: 699; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97) 10 20 30 40 50 60 pF1KE6 MALPLRPLTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSYLHSGHRPRPEFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MALPLRPLTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSYLHSGHRPRPEFR 10 20 30 40 50 60 70 80 90 pF1KE6 PYQHLRIRTKPYPWGDGNHTLFHNSHVNPLPTGYEHP ::::::::::::::::::::::::::::::::::::: NP_005 PYQHLRIRTKPYPWGDGNHTLFHNSHVNPLPTGYEHP 70 80 90 >>NP_004364 (OMIM: 602072,616039) cytochrome c oxidase s (109 aa) initn: 292 init1: 282 opt: 388 Z-score: 519.3 bits: 101.0 E(85289): 3.5e-22 Smith-Waterman score: 388; 63.4% identity (78.5% similar) in 93 aa overlap (6-95:17-107) 10 20 30 40 pF1KE6 MALPLRP-LTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSY :: : : ..:.:.: .:. :: :. ::: .:::.::. .: : NP_004 MAVVGVSSVSRLLGRSRPQLGRPMSSGAHGEEGS--ARMWKTLTFFVALPGVAVSMLNVY 10 20 30 40 50 50 60 70 80 90 pF1KE6 L--HSGHRPRPEFRPYQHLRIRTKPYPWGDGNHTLFHNSHVNPLPTGYEHP : : :.. :::: : ::::::::.:::::::::::: :::::::::: NP_004 LKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE 60 70 80 90 100 97 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:53:58 2016 done: Tue Nov 8 09:53:59 2016 Total Scan time: 4.220 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]