FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5613, 485 aa 1>>>pF1KE5613 485 - 485 aa - 485 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2749+/-0.000396; mu= 11.7414+/- 0.025 mean_var=228.5645+/-46.767, 0's: 0 Z-trim(120.4): 447 B-trim: 1796 in 1/55 Lambda= 0.084834 statistics sampled from 35036 (35587) to 35036 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.417), width: 16 Scan time: 7.970 The best scores are: opt bits E(85289) NP_068757 (OMIM: 612680) CUGBP Elav-like family me ( 485) 3280 414.4 3.5e-115 XP_006722895 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 485) 3280 414.4 3.5e-115 XP_006722896 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 484) 3261 412.1 1.8e-114 XP_006722899 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 382) 2501 319.0 1.5e-86 XP_006722900 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 371) 2497 318.5 2.1e-86 XP_006722901 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 371) 2497 318.5 2.1e-86 XP_011526475 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 371) 2497 318.5 2.1e-86 XP_011526476 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 370) 2478 316.1 1.1e-85 XP_016882600 (OMIM: 612680) PREDICTED: CUGBP Elav- ( 346) 2329 297.9 3.1e-80 XP_011524389 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 494) 2269 290.7 6.3e-78 XP_016881329 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 496) 2255 289.0 2.1e-77 XP_011524388 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 495) 2253 288.7 2.4e-77 NP_001166144 (OMIM: 612680) CUGBP Elav-like family ( 409) 2046 263.3 9.2e-70 NP_443072 (OMIM: 612681) CUGBP Elav-like family me ( 481) 2033 261.8 3.1e-69 XP_016881346 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 454) 2003 258.1 3.8e-68 XP_016881341 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 1897 245.2 3.1e-64 XP_016881338 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 473) 1895 244.9 3.7e-64 XP_016881340 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 1883 243.4 1e-63 XP_016881335 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 476) 1883 243.4 1e-63 XP_016881334 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 483) 1882 243.3 1.1e-63 XP_016881336 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 475) 1881 243.2 1.2e-63 XP_016881339 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 475) 1880 243.1 1.3e-63 XP_016881337 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 474) 1878 242.8 1.6e-63 NP_001317532 (OMIM: 612679) CUGBP Elav-like family ( 484) 1870 241.9 3.1e-63 XP_016881330 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 485) 1868 241.6 3.7e-63 XP_005258365 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 484) 1865 241.2 4.8e-63 NP_001020259 (OMIM: 612679) CUGBP Elav-like family ( 484) 1851 239.5 1.6e-62 XP_011524387 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 504) 1719 223.4 1.2e-57 XP_011524381 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 506) 1705 221.7 3.8e-57 XP_016881354 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 1702 221.3 4.6e-57 XP_011524385 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 505) 1702 221.3 5e-57 XP_011524383 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 505) 1697 220.7 7.6e-57 XP_011524386 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 504) 1694 220.3 9.8e-57 XP_016881351 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 1690 219.8 1.3e-56 XP_016881353 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 1688 219.5 1.5e-56 NP_001020260 (OMIM: 612679) CUGBP Elav-like family ( 448) 1688 219.5 1.5e-56 XP_016881348 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 455) 1687 219.4 1.7e-56 XP_016881349 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 1686 219.3 1.8e-56 XP_016881350 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 447) 1685 219.2 1.9e-56 XP_016881352 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 446) 1683 218.9 2.3e-56 XP_016881347 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 456) 1675 218.0 4.6e-56 XP_011524394 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 457) 1673 217.7 5.5e-56 XP_016881344 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 456) 1670 217.4 7e-56 NP_009116 (OMIM: 612678) CUGBP Elav-like family me ( 465) 1544 201.9 3.1e-51 NP_001278036 (OMIM: 612678) CUGBP Elav-like family ( 464) 1542 201.7 3.7e-51 NP_001278035 (OMIM: 612678) CUGBP Elav-like family ( 464) 1533 200.6 7.9e-51 XP_016881357 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 353) 1420 186.6 9.7e-47 XP_016881358 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 352) 1418 186.4 1.2e-46 XP_016881359 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 352) 1417 186.2 1.3e-46 XP_016881355 (OMIM: 612679) PREDICTED: CUGBP Elav- ( 362) 1405 184.8 3.5e-46 >>NP_068757 (OMIM: 612680) CUGBP Elav-like family member (485 aa) initn: 3280 init1: 3280 opt: 3280 Z-score: 2188.8 bits: 414.4 E(85289): 3.5e-115 Smith-Waterman score: 3280; 100.0% identity (100.0% similar) in 485 aa overlap (1-485:1-485) 10 20 30 40 50 60 pF1KE5 MARLTESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 MARLTESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 LKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 VKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 FSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 FSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 SPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 SPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAF 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 SGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 SGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMF 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 LPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 LPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 430 440 450 460 470 480 pF1KE5 PGHPY ::::: NP_068 PGHPY >>XP_006722895 (OMIM: 612680) PREDICTED: CUGBP Elav-like (485 aa) initn: 3280 init1: 3280 opt: 3280 Z-score: 2188.8 bits: 414.4 E(85289): 3.5e-115 Smith-Waterman score: 3280; 100.0% identity (100.0% similar) in 485 aa overlap (1-485:1-485) 10 20 30 40 50 60 pF1KE5 MARLTESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MARLTESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 VKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 FSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 FSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 SPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 SPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAF 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 SGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 SGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMF 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 LPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 430 440 450 460 470 480 pF1KE5 PGHPY ::::: XP_006 PGHPY >>XP_006722896 (OMIM: 612680) PREDICTED: CUGBP Elav-like (484 aa) initn: 2381 init1: 2381 opt: 3261 Z-score: 2176.3 bits: 412.1 E(85289): 1.8e-114 Smith-Waterman score: 3261; 99.8% identity (99.8% similar) in 485 aa overlap (1-485:1-484) 10 20 30 40 50 60 pF1KE5 MARLTESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MARLTESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVK ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::: XP_006 VKPADSESRGG-DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVK 130 140 150 160 170 190 200 210 220 230 240 pF1KE5 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLP 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE5 FSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 FSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE5 SPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 SPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAF 300 310 320 330 340 350 370 380 390 400 410 420 pF1KE5 SGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 SGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMF 360 370 380 390 400 410 430 440 450 460 470 480 pF1KE5 LPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 420 430 440 450 460 470 pF1KE5 PGHPY ::::: XP_006 PGHPY 480 >>XP_006722899 (OMIM: 612680) PREDICTED: CUGBP Elav-like (382 aa) initn: 2497 init1: 2497 opt: 2501 Z-score: 1674.7 bits: 319.0 E(85289): 1.5e-86 Smith-Waterman score: 2501; 99.5% identity (99.5% similar) in 375 aa overlap (113-485:8-382) 90 100 110 120 130 140 pF1KE5 GMHKGCAFLTYCARDSAIKAQTALHEQKTLPG--MARPIQVKPADSESRGGRDRKLFVGM :: :::::::::::::::::::::::::: XP_006 MPAWRASPGRWMARPIQVKPADSESRGGRDRKLFVGM 10 20 30 150 160 170 180 190 200 pF1KE5 LNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE5 PGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 PGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLS 100 110 120 130 140 150 270 280 290 300 310 320 pF1KE5 TSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 TSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNG 160 170 180 190 200 210 330 340 350 360 370 380 pF1KE5 FAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 FAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAH 220 230 240 250 260 270 390 400 410 420 430 440 pF1KE5 SVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 SVPQPPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQS 280 290 300 310 320 330 450 460 470 480 pF1KE5 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY ::::::::::::::::::::::::::::::::::::::::::::: XP_006 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY 340 350 360 370 380 >>XP_006722900 (OMIM: 612680) PREDICTED: CUGBP Elav-like (371 aa) initn: 2497 init1: 2497 opt: 2497 Z-score: 1672.2 bits: 318.5 E(85289): 2.1e-86 Smith-Waterman score: 2497; 100.0% identity (100.0% similar) in 371 aa overlap (115-485:1-371) 90 100 110 120 130 140 pF1KE5 HKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQ :::::::::::::::::::::::::::::: XP_006 MARPIQVKPADSESRGGRDRKLFVGMLNKQ 10 20 30 150 160 170 180 190 200 pF1KE5 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE5 SSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 SSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGS 100 110 120 130 140 150 270 280 290 300 310 320 pF1KE5 YLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 YLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGV 160 170 180 190 200 210 330 340 350 360 370 380 pF1KE5 VPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 VPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQ 220 230 240 250 260 270 390 400 410 420 430 440 pF1KE5 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG 280 290 300 310 320 330 450 460 470 480 pF1KE5 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY ::::::::::::::::::::::::::::::::::::::::: XP_006 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY 340 350 360 370 >>XP_006722901 (OMIM: 612680) PREDICTED: CUGBP Elav-like (371 aa) initn: 2497 init1: 2497 opt: 2497 Z-score: 1672.2 bits: 318.5 E(85289): 2.1e-86 Smith-Waterman score: 2497; 100.0% identity (100.0% similar) in 371 aa overlap (115-485:1-371) 90 100 110 120 130 140 pF1KE5 HKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQ :::::::::::::::::::::::::::::: XP_006 MARPIQVKPADSESRGGRDRKLFVGMLNKQ 10 20 30 150 160 170 180 190 200 pF1KE5 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE5 SSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 SSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGS 100 110 120 130 140 150 270 280 290 300 310 320 pF1KE5 YLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 YLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGV 160 170 180 190 200 210 330 340 350 360 370 380 pF1KE5 VPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 VPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQ 220 230 240 250 260 270 390 400 410 420 430 440 pF1KE5 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG 280 290 300 310 320 330 450 460 470 480 pF1KE5 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY ::::::::::::::::::::::::::::::::::::::::: XP_006 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY 340 350 360 370 >>XP_011526475 (OMIM: 612680) PREDICTED: CUGBP Elav-like (371 aa) initn: 2497 init1: 2497 opt: 2497 Z-score: 1672.2 bits: 318.5 E(85289): 2.1e-86 Smith-Waterman score: 2497; 100.0% identity (100.0% similar) in 371 aa overlap (115-485:1-371) 90 100 110 120 130 140 pF1KE5 HKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQ :::::::::::::::::::::::::::::: XP_011 MARPIQVKPADSESRGGRDRKLFVGMLNKQ 10 20 30 150 160 170 180 190 200 pF1KE5 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE5 SSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGS 100 110 120 130 140 150 270 280 290 300 310 320 pF1KE5 YLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGV 160 170 180 190 200 210 330 340 350 360 370 380 pF1KE5 VPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQ 220 230 240 250 260 270 390 400 410 420 430 440 pF1KE5 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG 280 290 300 310 320 330 450 460 470 480 pF1KE5 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY ::::::::::::::::::::::::::::::::::::::::: XP_011 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY 340 350 360 370 >>XP_011526476 (OMIM: 612680) PREDICTED: CUGBP Elav-like (370 aa) initn: 2381 init1: 2381 opt: 2478 Z-score: 1659.7 bits: 316.1 E(85289): 1.1e-85 Smith-Waterman score: 2478; 99.7% identity (99.7% similar) in 371 aa overlap (115-485:1-370) 90 100 110 120 130 140 pF1KE5 HKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQ ::::::::::::::::: :::::::::::: XP_011 MARPIQVKPADSESRGG-DRKLFVGMLNKQ 10 20 150 160 170 180 190 200 pF1KE5 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 30 40 50 60 70 80 210 220 230 240 250 260 pF1KE5 SSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGS 90 100 110 120 130 140 270 280 290 300 310 320 pF1KE5 YLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGV 150 160 170 180 190 200 330 340 350 360 370 380 pF1KE5 VPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQ 210 220 230 240 250 260 390 400 410 420 430 440 pF1KE5 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PPPLLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFG 270 280 290 300 310 320 450 460 470 480 pF1KE5 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY ::::::::::::::::::::::::::::::::::::::::: XP_011 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY 330 340 350 360 370 >>XP_016882600 (OMIM: 612680) PREDICTED: CUGBP Elav-like (346 aa) initn: 2329 init1: 2329 opt: 2329 Z-score: 1561.4 bits: 297.9 E(85289): 3.1e-80 Smith-Waterman score: 2329; 100.0% identity (100.0% similar) in 346 aa overlap (140-485:1-346) 110 120 130 140 150 160 pF1KE5 KTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP :::::::::::::::::::::::::::::: XP_016 MLNKQQSEEDVLRLFQPFGVIDECTVLRGP 10 20 30 170 180 190 200 210 220 pF1KE5 DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 40 50 60 70 80 90 230 240 250 260 270 280 pF1KE5 LGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLP 100 110 120 130 140 150 290 300 310 320 330 340 pF1KE5 ATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQS 160 170 180 190 200 210 350 360 370 380 390 400 pF1KE5 PTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PTVAETLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQ 220 230 240 250 260 270 410 420 430 440 450 460 pF1KE5 EFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK 280 290 300 310 320 330 470 480 pF1KE5 RLKVQLKRPKDPGHPY :::::::::::::::: XP_016 RLKVQLKRPKDPGHPY 340 >>XP_011524389 (OMIM: 612679) PREDICTED: CUGBP Elav-like (494 aa) initn: 1257 init1: 1257 opt: 2269 Z-score: 1520.0 bits: 290.7 E(85289): 6.3e-78 Smith-Waterman score: 2269; 72.1% identity (90.1% similar) in 463 aa overlap (26-485:37-494) 10 20 30 40 50 pF1KE5 MARLTESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRH : .: :. : ::: ::::::.:::::. XP_011 TLANGQADNASLSTNGLGSSPGSAGHMNGLSHSPGNPSTIP--MKDHDAIKLFIGQIPRN 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 LDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGM :::::::::::.::.::::::::: .::::::::::::: :.::.:::.::::::::::: XP_011 LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 ARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKG :::::::::::::: .:::::::::::::::.:: :::. :: :.:::.::::::.::: XP_011 NRPIQVKPADSESRG-EDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKG 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTP :::::.:::.::::::.:::::::::::::::::::::::::::.::::::.::.:...: XP_011 CAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFNP 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE5 SLTLPFSPYSAYAQALMQQQTTVLST--SGSYLSPGVAFSPCHIQQIGAVSLNGLPATPI ...::. :.::::::::::...... .:.::.: .::. ..::..:...::: :.:. XP_011 -MAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPM 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE5 APASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTV .:.:: .:: . . :::.. .:: .:::.:. : .:.:: :.:.:::. ::::::::. XP_011 TPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPTA 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE5 AETLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGPEGCNLFIYHLPQEFG :. :. :..:::::.: :: :: :... :::::.. :::::::::::::::::::::: XP_011 ADPLQQAYAGVQQYAAAYP-AAYGQISQAFPQPPPMIPQQQREGPEGCNLFIYHLPQEFG 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE5 DTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK :.:: ::::::::.::::::.::::::::::::::::::::::.:::::::::::::::: XP_011 DAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLK 430 440 450 460 470 480 480 pF1KE5 VQLKRPKDPGHPY :::::::: ..:: XP_011 VQLKRPKDANRPY 490 485 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:09:32 2016 done: Tue Nov 8 05:09:33 2016 Total Scan time: 7.970 Total Display time: 0.060 Function used was FASTA [36.3.4 Apr, 2011]