FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1559, 495 aa 1>>>pF1KE1559 495 - 495 aa - 495 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.1514+/-0.000781; mu= 11.5154+/- 0.047 mean_var=129.7010+/-25.302, 0's: 0 Z-trim(113.5): 21 B-trim: 18 in 2/50 Lambda= 0.112617 statistics sampled from 14084 (14103) to 14084 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.433), width: 16 Scan time: 2.980 The best scores are: opt bits E(32554) CCDS8000.1 CD5 gene_id:921|Hs108|chr11 ( 495) 3456 572.4 4e-163 >>CCDS8000.1 CD5 gene_id:921|Hs108|chr11 (495 aa) initn: 3456 init1: 3456 opt: 3456 Z-score: 3042.1 bits: 572.4 E(32554): 4e-163 Smith-Waterman score: 3456; 99.6% identity (100.0% similar) in 495 aa overlap (1-495:1-495) 10 20 30 40 50 60 pF1KE1 MPMGSLQPLATLYLLGMLVASCLGRLSWYDPDFQARLTRSNSKCQGQLEVYLKDGWHMVC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 MPMGSLQPLATLYLLGMLVASCLGRLSWYDPDFQARLTRSNSKCQGQLEVYLKDGWHMVC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 SQSWGRSSKQWEDPSQASKVCQRLNCGVPLSLGPFLVTYTPQSSIICYGQLGSFSNCSHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 SQSWGRSSKQWEDPSQASKVCQRLNCGVPLSLGPFLVTYTPQSSIICYGQLGSFSNCSHS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RNDMCHSLGLTCLEPQKTTPPTTRPPPTTTPEPTAPPRLQLVAQSGGQHCAGVVEFYSGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 RNDMCHSLGLTCLEPQKTTPPTTRPPPTTTPEPTAPPRLQLVAQSGGQHCAGVVEFYSGS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 LGGTISYEAQDKTQDLENFLCNNLQCGSFLKHLPETEAGRAQDPGEPREHQPLPIQWKIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 LGGTISYEAQDKTQDLENFLCNNLQCGSFLKHLPETEAGRAQDPGEPREHQPLPIQWKIQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 NSSCTSLEHCFRKIKPQKSGRVLALLCSGFQPKVQSRLVGGSSICEGTVEVRQGAQWAAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 NSSCTSLEHCFRKIKPQKSGRVLALLCSGFQPKVQSRLVGGSSICEGTVEVRQGAQWAAL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 CDSSSARSSLRWEEVCREQQCGSVNSYRVLDAGDPTSRGLFCPHQKLSQCHELWERNSYC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 CDSSSARSSLRWEEVCREQQCGSVNSYRVLDAGDPTSRGLFCPHQKLSQCHELWERNSYC 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 KKVFVTCQDPNPAGLAAGTVASIILALVLLVVLLVVCGPLAYKKLVKKFRQKKQRQWIGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 KKVFVTCQDPNPAGLAAGTVASIILALVLLVVLLVVCGPLAYKKLVKKFRQKKQRQWIGP 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 TGMNQNMSFHRNHTATVRSHAENPTASHVDNEYSQPPRNSRLSAYPALEGVLHRSSMQPD ::::::::::::::::::::::::::::::::::::::::.:::::::::.::::::::: CCDS80 TGMNQNMSFHRNHTATVRSHAENPTASHVDNEYSQPPRNSHLSAYPALEGALHRSSMQPD 430 440 450 460 470 480 490 pF1KE1 NSSDSDYDLHGAQRL ::::::::::::::: CCDS80 NSSDSDYDLHGAQRL 490 495 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:25:15 2016 done: Mon Nov 7 00:25:16 2016 Total Scan time: 2.980 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]