Result of FASTA (ccds) for pFN21AE1559
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1559, 495 aa
  1>>>pF1KE1559 495 - 495 aa - 495 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1514+/-0.000781; mu= 11.5154+/- 0.047
 mean_var=129.7010+/-25.302, 0's: 0 Z-trim(113.5): 21  B-trim: 18 in 2/50
 Lambda= 0.112617
 statistics sampled from 14084 (14103) to 14084 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.433), width:  16
 Scan time:  2.980

The best scores are:                                      opt bits E(32554)
CCDS8000.1 CD5 gene_id:921|Hs108|chr11             ( 495) 3456 572.4  4e-163


>>CCDS8000.1 CD5 gene_id:921|Hs108|chr11                  (495 aa)
 initn: 3456 init1: 3456 opt: 3456  Z-score: 3042.1  bits: 572.4 E(32554): 4e-163
Smith-Waterman score: 3456; 99.6% identity (100.0% similar) in 495 aa overlap (1-495:1-495)

               10        20        30        40        50        60
pF1KE1 MPMGSLQPLATLYLLGMLVASCLGRLSWYDPDFQARLTRSNSKCQGQLEVYLKDGWHMVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MPMGSLQPLATLYLLGMLVASCLGRLSWYDPDFQARLTRSNSKCQGQLEVYLKDGWHMVC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 SQSWGRSSKQWEDPSQASKVCQRLNCGVPLSLGPFLVTYTPQSSIICYGQLGSFSNCSHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 SQSWGRSSKQWEDPSQASKVCQRLNCGVPLSLGPFLVTYTPQSSIICYGQLGSFSNCSHS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RNDMCHSLGLTCLEPQKTTPPTTRPPPTTTPEPTAPPRLQLVAQSGGQHCAGVVEFYSGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 RNDMCHSLGLTCLEPQKTTPPTTRPPPTTTPEPTAPPRLQLVAQSGGQHCAGVVEFYSGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LGGTISYEAQDKTQDLENFLCNNLQCGSFLKHLPETEAGRAQDPGEPREHQPLPIQWKIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 LGGTISYEAQDKTQDLENFLCNNLQCGSFLKHLPETEAGRAQDPGEPREHQPLPIQWKIQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 NSSCTSLEHCFRKIKPQKSGRVLALLCSGFQPKVQSRLVGGSSICEGTVEVRQGAQWAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 NSSCTSLEHCFRKIKPQKSGRVLALLCSGFQPKVQSRLVGGSSICEGTVEVRQGAQWAAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 CDSSSARSSLRWEEVCREQQCGSVNSYRVLDAGDPTSRGLFCPHQKLSQCHELWERNSYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 CDSSSARSSLRWEEVCREQQCGSVNSYRVLDAGDPTSRGLFCPHQKLSQCHELWERNSYC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 KKVFVTCQDPNPAGLAAGTVASIILALVLLVVLLVVCGPLAYKKLVKKFRQKKQRQWIGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 KKVFVTCQDPNPAGLAAGTVASIILALVLLVVLLVVCGPLAYKKLVKKFRQKKQRQWIGP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 TGMNQNMSFHRNHTATVRSHAENPTASHVDNEYSQPPRNSRLSAYPALEGVLHRSSMQPD
       ::::::::::::::::::::::::::::::::::::::::.:::::::::.:::::::::
CCDS80 TGMNQNMSFHRNHTATVRSHAENPTASHVDNEYSQPPRNSHLSAYPALEGALHRSSMQPD
              430       440       450       460       470       480

              490     
pF1KE1 NSSDSDYDLHGAQRL
       :::::::::::::::
CCDS80 NSSDSDYDLHGAQRL
              490     




495 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:25:15 2016 done: Mon Nov  7 00:25:16 2016
 Total Scan time:  2.980 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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