FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3641, 503 aa 1>>>pF1KE3641 503 - 503 aa - 503 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7511+/-0.000803; mu= 16.9697+/- 0.048 mean_var=90.0583+/-17.870, 0's: 0 Z-trim(109.9): 11 B-trim: 0 in 0/52 Lambda= 0.135149 statistics sampled from 11192 (11199) to 11192 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.344), width: 16 Scan time: 2.970 The best scores are: opt bits E(32554) CCDS46081.1 COQ8B gene_id:79934|Hs108|chr19 ( 503) 3458 684.3 8.5e-197 CCDS12562.1 COQ8B gene_id:79934|Hs108|chr19 ( 544) 2587 514.5 1.2e-145 CCDS1557.1 COQ8A gene_id:56997|Hs108|chr1 ( 647) 1518 306.1 7.6e-83 >>CCDS46081.1 COQ8B gene_id:79934|Hs108|chr19 (503 aa) initn: 3458 init1: 3458 opt: 3458 Z-score: 3646.6 bits: 684.3 E(32554): 8.5e-197 Smith-Waterman score: 3458; 100.0% identity (100.0% similar) in 503 aa overlap (1-503:1-503) 10 20 30 40 50 60 pF1KE3 MWLKVGGLLRGTGGQLGQTVGWPCGALGPGPHRWGPCGGSWAQKFYQDGPGRGLGEEDIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MWLKVGGLLRGTGGQLGQTVGWPCGALGPGPHRWGPCGGSWAQKFYQDGPGRGLGEEDIR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RAREARPRKTPRPQLSDRSRERKVPASRISRLANFGGLAVGLGLGVLAEMAKKSMPGGRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 RAREARPRKTPRPQLSDRSRERKVPASRISRLANFGGLAVGLGLGVLAEMAKKSMPGGRL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 QSDNSFISPQLQHIFERVRQSADFMPRWQMLRVLEEELGRDWQAKVASLEEVPFAAASIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 QSDNSFISPQLQHIFERVRQSADFMPRWQMLRVLEEELGRDWQAKVASLEEVPFAAASIG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 QVHQGLLRDGTEVAVKIQYPGIAQSIQSDVQNLLAVLKMSAALPAGLFAEQSLQALQQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 QVHQGLLRDGTEVAVKIQYPGIAQSIQSDVQNLLAVLKMSAALPAGLFAEQSLQALQQEL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 AWECDYRREAACAQNFRQLLANDPFFRVPAVVKELCTTRVLGMELAGGVPLDQCQGLSQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 AWECDYRREAACAQNFRQLLANDPFFRVPAVVKELCTTRVLGMELAGGVPLDQCQGLSQD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 LRNQICFQLLTLCLRELFEFRFMQTDPNWANFLYDASSHQVTLLDFGASREFGTEFTDHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 LRNQICFQLLTLCLRELFEFRFMQTDPNWANFLYDASSHQVTLLDFGASREFGTEFTDHY 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 IEVVKAAADGDRDCVLQKSRDLKFLTGFETKAFSDAHVEAVMILGEPFATQGPYDFGSGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 IEVVKAAADGDRDCVLQKSRDLKFLTGFETKAFSDAHVEAVMILGEPFATQGPYDFGSGE 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 TARRIQDLIPVLLRHRLCPPPEETYALHRKLAGAFLACAHLRAHIACRDLFQDTYHRYWA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 TARRIQDLIPVLLRHRLCPPPEETYALHRKLAGAFLACAHLRAHIACRDLFQDTYHRYWA 430 440 450 460 470 480 490 500 pF1KE3 SRQPDAATAGSLPTKGDSWVDPS ::::::::::::::::::::::: CCDS46 SRQPDAATAGSLPTKGDSWVDPS 490 500 >>CCDS12562.1 COQ8B gene_id:79934|Hs108|chr19 (544 aa) initn: 2586 init1: 2586 opt: 2587 Z-score: 2728.3 bits: 514.5 E(32554): 1.2e-145 Smith-Waterman score: 3302; 92.3% identity (92.3% similar) in 535 aa overlap (10-503:10-544) 10 20 30 40 50 60 pF1KE3 MWLKVGGLLRGTGGQLGQTVGWPCGALGPGPHRWGPCGGSWAQKFYQDGPGRGLGEEDIR ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MWLKVGGLLRGTGGQLGQTVGWPCGALGPGPHRWGPCGGSWAQKFYQDGPGRGLGEEDIR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 RAREARPRKTPRPQLSDRSRERKVPASRISRLANFGGLAVGLGLGVLAEMAKKSMPGGRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RAREARPRKTPRPQLSDRSRERKVPASRISRLANFGGLAVGLGLGVLAEMAKKSMPGGRL 70 80 90 100 110 120 130 pF1KE3 QS-----------------------------------------DNSFISPQLQHIFERVR :: ::::::::::::::::: CCDS12 QSEGGSGLDSSPFLSEANAERIVQTLCTVRGAALKVGQMLSIQDNSFISPQLQHIFERVR 130 140 150 160 170 180 140 150 160 170 180 190 pF1KE3 QSADFMPRWQMLRVLEEELGRDWQAKVASLEEVPFAAASIGQVHQGLLRDGTEVAVKIQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 QSADFMPRWQMLRVLEEELGRDWQAKVASLEEVPFAAASIGQVHQGLLRDGTEVAVKIQY 190 200 210 220 230 240 200 210 220 230 240 250 pF1KE3 PGIAQSIQSDVQNLLAVLKMSAALPAGLFAEQSLQALQQELAWECDYRREAACAQNFRQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PGIAQSIQSDVQNLLAVLKMSAALPAGLFAEQSLQALQQELAWECDYRREAACAQNFRQL 250 260 270 280 290 300 260 270 280 290 300 310 pF1KE3 LANDPFFRVPAVVKELCTTRVLGMELAGGVPLDQCQGLSQDLRNQICFQLLTLCLRELFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LANDPFFRVPAVVKELCTTRVLGMELAGGVPLDQCQGLSQDLRNQICFQLLTLCLRELFE 310 320 330 340 350 360 320 330 340 350 360 370 pF1KE3 FRFMQTDPNWANFLYDASSHQVTLLDFGASREFGTEFTDHYIEVVKAAADGDRDCVLQKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 FRFMQTDPNWANFLYDASSHQVTLLDFGASREFGTEFTDHYIEVVKAAADGDRDCVLQKS 370 380 390 400 410 420 380 390 400 410 420 430 pF1KE3 RDLKFLTGFETKAFSDAHVEAVMILGEPFATQGPYDFGSGETARRIQDLIPVLLRHRLCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RDLKFLTGFETKAFSDAHVEAVMILGEPFATQGPYDFGSGETARRIQDLIPVLLRHRLCP 430 440 450 460 470 480 440 450 460 470 480 490 pF1KE3 PPEETYALHRKLAGAFLACAHLRAHIACRDLFQDTYHRYWASRQPDAATAGSLPTKGDSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PPEETYALHRKLAGAFLACAHLRAHIACRDLFQDTYHRYWASRQPDAATAGSLPTKGDSW 490 500 510 520 530 540 500 pF1KE3 VDPS :::: CCDS12 VDPS >>CCDS1557.1 COQ8A gene_id:56997|Hs108|chr1 (647 aa) initn: 1740 init1: 1505 opt: 1518 Z-score: 1600.8 bits: 306.1 E(32554): 7.6e-83 Smith-Waterman score: 1718; 52.3% identity (76.1% similar) in 514 aa overlap (14-483:132-644) 10 20 30 40 pF1KE3 MWLKVGGLLRGTGGQLGQTVGWPCGALGPGPHRWGPCGGSWAQ :: .. .: : : .:. : . CCDS15 SAPPSLGHAHSEGPAPAYVASGPFREAGFPGQASSPLGRANGRLFANPRDSFSAMGFQRR 110 120 130 140 150 160 50 60 70 80 90 pF1KE3 KFYQD-GPGRGLGEEDIRRAREARPR---KTPRPQLSDRSRERKVPASRISRLANFGGLA :.:: .: :: :::..::.:. : : . ::...::::::..::.::::::::: CCDS15 FFHQDQSPVGGLTAEDIEKARQAKARPENKQHKQTLSEHARERKVPVTRIGRLANFGGLA 170 180 190 200 210 220 100 110 120 pF1KE3 VGLGLGVLAEMAKKSM----PGGR---LQS------------------------------ ::::.:.:::.::::. :.:. : : CCDS15 VGLGFGALAEVAKKSLRSEDPSGKKAVLGSSPFLSEANAERIVRTLCKVRGAALKLGQML 230 240 250 260 270 280 130 140 150 160 170 pF1KE3 ---DNSFISPQLQHIFERVRQSADFMPRWQMLRVLEEELGRDWQAKVASLEEVPFAAASI :..::.:.: .::::::::::::: ::...:...:: .:. :. .:: ::::::: CCDS15 SIQDDAFINPHLAKIFERVRQSADFMPLKQMMKTLNNDLGPNWRDKLEYFEERPFAAASI 290 300 310 320 330 340 180 190 200 210 220 230 pF1KE3 GQVHQGLLRDGTEVAVKIQYPGIAQSIQSDVQNLLAVLKMSAALPAGLFAEQSLQALQQE :::: . .. : :::.::::::.::::.:::.::.:::.:: :: ::: :. ...:..: CCDS15 GQVHLARMKGGREVAMKIQYPGVAQSINSDVNNLMAVLNMSNMLPEGLFPEHLIDVLRRE 350 360 370 380 390 400 240 250 260 270 280 290 pF1KE3 LAWECDYRREAACAQNFRQLLANDPFFRVPAVVKELCTTRVLGMELAGGVPLDQCQGLSQ :: ::::.::::::..::.:: . ::: :: .: :::. .:: ::..: :::: .:::: CCDS15 LALECDYQREAACARKFRDLLKGHPFFYVPEIVDELCSPHVLTTELVSGFPLDQAEGLSQ 410 420 430 440 450 460 300 310 320 330 340 350 pF1KE3 DLRNQICFQLLTLCLRELFEFRFMQTDPNWANFLYDASSHQVTLLDFGASREFGTEFTDH ..::.::...:.:::::::::.::::::::.::.:: ..:.:.::::::.::. ::: CCDS15 EIRNEICYNILVLCLRELFEFHFMQTDPNWSNFFYDPQQHKVALLDFGATREYDRSFTDL 470 480 490 500 510 520 360 370 380 390 400 410 pF1KE3 YIEVVKAAADGDRDCVLQKSRDLKFLTGFETKAFSDAHVEAVMILGEPFATQGPYDFGSG ::....:::: ::. : :: ..:::::.:.:.. :::..:..:::: ::.. :.:::. CCDS15 YIQIIRAAADRDRETVRAKSIEMKFLTGYEVKVMEDAHLDAILILGEAFASDEPFDFGTQ 530 540 550 560 570 580 420 430 440 450 460 470 pF1KE3 ETARRIQDLIPVLLRHRLCPPPEETYALHRKLAGAFLACAHLRAHIACRDLFQDTYHRYW :...:..::::.::::: :::::::.::::..:.:: :..:.:.. :. .:...: : CCDS15 STTEKIHNLIPVMLRHRLVPPPEETYSLHRKMGGSFLICSKLKARFPCKAMFEEAYSNY- 590 600 610 620 630 640 480 490 500 pF1KE3 ASRQPDAATAGSLPTKGDSWVDPS .:: CCDS15 CKRQAQQ 503 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:26:36 2016 done: Mon Nov 7 00:26:37 2016 Total Scan time: 2.970 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]