FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6431, 460 aa 1>>>pF1KE6431 460 - 460 aa - 460 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0329+/-0.000362; mu= 21.4000+/- 0.023 mean_var=88.4791+/-17.723, 0's: 0 Z-trim(114.2): 45 B-trim: 58 in 1/54 Lambda= 0.136350 statistics sampled from 23942 (23977) to 23942 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.281), width: 16 Scan time: 5.970 The best scores are: opt bits E(85289) NP_057305 (OMIM: 614758) dynactin subunit 4 isofor ( 460) 3095 618.9 8.9e-177 NP_001129115 (OMIM: 614758) dynactin subunit 4 iso ( 467) 3071 614.2 2.4e-175 XP_011535946 (OMIM: 614758) PREDICTED: dynactin su ( 403) 2701 541.3 1.7e-153 NP_001129116 (OMIM: 614758) dynactin subunit 4 iso ( 403) 2701 541.3 1.7e-153 XP_011535947 (OMIM: 614758) PREDICTED: dynactin su ( 403) 2701 541.3 1.7e-153 XP_011535948 (OMIM: 614758) PREDICTED: dynactin su ( 381) 2528 507.3 2.9e-143 XP_005268514 (OMIM: 614758) PREDICTED: dynactin su ( 317) 2092 421.4 1.7e-117 XP_011535949 (OMIM: 614758) PREDICTED: dynactin su ( 317) 2092 421.4 1.7e-117 >>NP_057305 (OMIM: 614758) dynactin subunit 4 isoform b (460 aa) initn: 3095 init1: 3095 opt: 3095 Z-score: 3294.7 bits: 618.9 E(85289): 8.9e-177 Smith-Waterman score: 3095; 99.8% identity (99.8% similar) in 460 aa overlap (1-460:1-460) 10 20 30 40 50 60 pF1KE6 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLTDDPAKTTMKKAYYLACGFCRWTSRD :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: NP_057 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 KYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 KYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 EVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 EVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 VAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDINSTAKVVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 VAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDINSTAKVVV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 PPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEGEVTVCFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 PPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEGEVTVCFK 370 380 390 400 410 420 430 440 450 460 pF1KE6 MKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP :::::::::::::::::::::::::::::::::::::::: NP_057 MKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 430 440 450 460 >>NP_001129115 (OMIM: 614758) dynactin subunit 4 isoform (467 aa) initn: 3081 init1: 1860 opt: 3071 Z-score: 3269.1 bits: 614.2 E(85289): 2.4e-175 Smith-Waterman score: 3071; 98.3% identity (98.3% similar) in 467 aa overlap (1-460:1-467) 10 20 30 40 50 60 pF1KE6 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLTDDPAKTTMKKAYYLACGFCRWTSRD :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: NP_001 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFS- ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSQ 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE6 ------DKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY :::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HTIHVVDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE6 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE6 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE6 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG 370 380 390 400 410 420 420 430 440 450 460 pF1KE6 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 430 440 450 460 >>XP_011535946 (OMIM: 614758) PREDICTED: dynactin subuni (403 aa) initn: 2701 init1: 2701 opt: 2701 Z-score: 2876.5 bits: 541.3 E(85289): 1.7e-153 Smith-Waterman score: 2701; 99.8% identity (99.8% similar) in 403 aa overlap (58-460:1-403) 30 40 50 60 70 80 pF1KE6 YFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRCANCFDCPGCMHTLSTRA :::::::::::::::::::::::::::::: XP_011 MPSAEAKLKKNRCANCFDCPGCMHTLSTRA 10 20 30 90 100 110 120 130 140 pF1KE6 TSISTQLTDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKL ::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TSISTQLPDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKL 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE6 IEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKE 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE6 GEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHK 160 170 180 190 200 210 270 280 290 300 310 320 pF1KE6 HLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 HLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLL 220 230 240 250 260 270 330 340 350 360 370 380 pF1KE6 TLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQD 280 290 300 310 320 330 390 400 410 420 430 440 pF1KE6 DPDIIAFRKANKVGIFIKVTPQREEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DPDIIAFRKANKVGIFIKVTPQREEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWL 340 350 360 370 380 390 450 460 pF1KE6 TQHVELSLGPLLP ::::::::::::: XP_011 TQHVELSLGPLLP 400 >>NP_001129116 (OMIM: 614758) dynactin subunit 4 isoform (403 aa) initn: 2701 init1: 2701 opt: 2701 Z-score: 2876.5 bits: 541.3 E(85289): 1.7e-153 Smith-Waterman score: 2701; 99.8% identity (99.8% similar) in 403 aa overlap (58-460:1-403) 30 40 50 60 70 80 pF1KE6 YFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRCANCFDCPGCMHTLSTRA :::::::::::::::::::::::::::::: NP_001 MPSAEAKLKKNRCANCFDCPGCMHTLSTRA 10 20 30 90 100 110 120 130 140 pF1KE6 TSISTQLTDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKL ::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TSISTQLPDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKL 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE6 IEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKE 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE6 GEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHK 160 170 180 190 200 210 270 280 290 300 310 320 pF1KE6 HLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLL 220 230 240 250 260 270 330 340 350 360 370 380 pF1KE6 TLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQD 280 290 300 310 320 330 390 400 410 420 430 440 pF1KE6 DPDIIAFRKANKVGIFIKVTPQREEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DPDIIAFRKANKVGIFIKVTPQREEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWL 340 350 360 370 380 390 450 460 pF1KE6 TQHVELSLGPLLP ::::::::::::: NP_001 TQHVELSLGPLLP 400 >>XP_011535947 (OMIM: 614758) PREDICTED: dynactin subuni (403 aa) initn: 2701 init1: 2701 opt: 2701 Z-score: 2876.5 bits: 541.3 E(85289): 1.7e-153 Smith-Waterman score: 2701; 99.8% identity (99.8% similar) in 403 aa overlap (58-460:1-403) 30 40 50 60 70 80 pF1KE6 YFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRCANCFDCPGCMHTLSTRA :::::::::::::::::::::::::::::: XP_011 MPSAEAKLKKNRCANCFDCPGCMHTLSTRA 10 20 30 90 100 110 120 130 140 pF1KE6 TSISTQLTDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKL ::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TSISTQLPDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKL 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE6 IEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKE 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE6 GEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHK 160 170 180 190 200 210 270 280 290 300 310 320 pF1KE6 HLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 HLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLL 220 230 240 250 260 270 330 340 350 360 370 380 pF1KE6 TLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQD 280 290 300 310 320 330 390 400 410 420 430 440 pF1KE6 DPDIIAFRKANKVGIFIKVTPQREEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DPDIIAFRKANKVGIFIKVTPQREEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWL 340 350 360 370 380 390 450 460 pF1KE6 TQHVELSLGPLLP ::::::::::::: XP_011 TQHVELSLGPLLP 400 >>XP_011535948 (OMIM: 614758) PREDICTED: dynactin subuni (381 aa) initn: 2528 init1: 2528 opt: 2528 Z-score: 2692.9 bits: 507.3 E(85289): 2.9e-143 Smith-Waterman score: 2528; 99.7% identity (99.7% similar) in 381 aa overlap (80-460:1-381) 50 60 70 80 90 100 pF1KE6 YCPSCLENMPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLTDDPAKTTMKKAYYL ::::::::::::::: :::::::::::::: XP_011 MHTLSTRATSISTQLPDDPAKTTMKKAYYL 10 20 30 110 120 130 140 150 160 pF1KE6 ACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLAR 40 50 60 70 80 90 170 180 190 200 210 220 pF1KE6 RRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLP 100 110 120 130 140 150 230 240 250 260 270 280 pF1KE6 EDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEF 160 170 180 190 200 210 290 300 310 320 330 340 pF1KE6 NPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDP 220 230 240 250 260 270 350 360 370 380 390 400 pF1KE6 DDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQ 280 290 300 310 320 330 410 420 430 440 450 460 pF1KE6 REEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP ::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 REEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 340 350 360 370 380 >>XP_005268514 (OMIM: 614758) PREDICTED: dynactin subuni (317 aa) initn: 2092 init1: 2092 opt: 2092 Z-score: 2230.4 bits: 421.4 E(85289): 1.7e-117 Smith-Waterman score: 2092; 100.0% identity (100.0% similar) in 317 aa overlap (144-460:1-317) 120 130 140 150 160 170 pF1KE6 CRWTSRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNY :::::::::::::::::::::::::::::: XP_005 MNKLIEYYQQLAQKEKVERDRKKLARRRNY 10 20 30 180 190 200 210 220 230 pF1KE6 MPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY 40 50 60 70 80 90 240 250 260 270 280 290 pF1KE6 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS 100 110 120 130 140 150 300 310 320 330 340 350 pF1KE6 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN 160 170 180 190 200 210 360 370 380 390 400 410 pF1KE6 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG 220 230 240 250 260 270 420 430 440 450 460 pF1KE6 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP ::::::::::::::::::::::::::::::::::::::::::::::: XP_005 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 280 290 300 310 >>XP_011535949 (OMIM: 614758) PREDICTED: dynactin subuni (317 aa) initn: 2092 init1: 2092 opt: 2092 Z-score: 2230.4 bits: 421.4 E(85289): 1.7e-117 Smith-Waterman score: 2092; 100.0% identity (100.0% similar) in 317 aa overlap (144-460:1-317) 120 130 140 150 160 170 pF1KE6 CRWTSRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNY :::::::::::::::::::::::::::::: XP_011 MNKLIEYYQQLAQKEKVERDRKKLARRRNY 10 20 30 180 190 200 210 220 230 pF1KE6 MPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY 40 50 60 70 80 90 240 250 260 270 280 290 pF1KE6 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS 100 110 120 130 140 150 300 310 320 330 340 350 pF1KE6 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN 160 170 180 190 200 210 360 370 380 390 400 410 pF1KE6 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG 220 230 240 250 260 270 420 430 440 450 460 pF1KE6 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP ::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP 280 290 300 310 460 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 13:14:15 2016 done: Tue Nov 8 13:14:16 2016 Total Scan time: 5.970 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]