Result of FASTA (ccds) for pFN21AE6431
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6431, 460 aa
  1>>>pF1KE6431 460 - 460 aa - 460 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9238+/-0.000905; mu= 15.7937+/- 0.054
 mean_var=85.3743+/-17.045, 0's: 0 Z-trim(107.4): 20  B-trim: 4 in 1/52
 Lambda= 0.138807
 statistics sampled from 9547 (9555) to 9547 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.294), width:  16
 Scan time:  2.730

The best scores are:                                      opt bits E(32554)
CCDS4310.1 DCTN4 gene_id:51164|Hs108|chr5          ( 460) 3095 629.6  2e-180
CCDS47310.1 DCTN4 gene_id:51164|Hs108|chr5         ( 467) 3071 624.8 5.6e-179
CCDS47311.1 DCTN4 gene_id:51164|Hs108|chr5         ( 403) 2701 550.7  1e-156


>>CCDS4310.1 DCTN4 gene_id:51164|Hs108|chr5               (460 aa)
 initn: 3095 init1: 3095 opt: 3095  Z-score: 3352.8  bits: 629.6 E(32554): 2e-180
Smith-Waterman score: 3095; 99.8% identity (99.8% similar) in 460 aa overlap (1-460:1-460)

               10        20        30        40        50        60
pF1KE6 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLTDDPAKTTMKKAYYLACGFCRWTSRD
       :::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
CCDS43 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 KYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 EVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 VAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDINSTAKVVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDINSTAKVVV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 PPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEGEVTVCFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEGEVTVCFK
              370       380       390       400       410       420

              430       440       450       460
pF1KE6 MKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
       ::::::::::::::::::::::::::::::::::::::::
CCDS43 MKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
              430       440       450       460

>>CCDS47310.1 DCTN4 gene_id:51164|Hs108|chr5              (467 aa)
 initn: 3081 init1: 1860 opt: 3071  Z-score: 3326.7  bits: 624.8 E(32554): 5.6e-179
Smith-Waterman score: 3071; 98.3% identity (98.3% similar) in 467 aa overlap (1-460:1-467)

               10        20        30        40        50        60
pF1KE6 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MASLLQSDRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDSHYCPSCLENMPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLTDDPAKTTMKKAYYLACGFCRWTSRD
       :::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
CCDS47 AEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTMKKAYYLACGFCRWTSRD
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE6 VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFS-
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS47 VGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLAQKEKVERDRKKLARRRNYMPLAFSQ
              130       140       150       160       170       180

           180       190       200       210       220       230   
pF1KE6 ------DKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 HTIHVVDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEIKIEPAQAVDEVEPLPEDYY
              190       200       210       220       230       240

           240       250       260       270       280       290   
pF1KE6 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPEFNPTS
              250       260       270       280       290       300

           300       310       320       330       340       350   
pF1KE6 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEEGDPDDIN
              310       320       330       340       350       360

           360       370       380       390       400       410   
pF1KE6 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 STAKVVVPPKELVLAGKDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQREEG
              370       380       390       400       410       420

           420       430       440       450       460
pF1KE6 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWLTQHVELSLGPLLP
              430       440       450       460       

>>CCDS47311.1 DCTN4 gene_id:51164|Hs108|chr5              (403 aa)
 initn: 2701 init1: 2701 opt: 2701  Z-score: 2927.2  bits: 550.7 E(32554): 1e-156
Smith-Waterman score: 2701; 99.8% identity (99.8% similar) in 403 aa overlap (58-460:1-403)

        30        40        50        60        70        80       
pF1KE6 YFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRCANCFDCPGCMHTLSTRA
                                     ::::::::::::::::::::::::::::::
CCDS47                               MPSAEAKLKKNRCANCFDCPGCMHTLSTRA
                                             10        20        30

        90       100       110       120       130       140       
pF1KE6 TSISTQLTDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKL
       ::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TSISTQLPDDPAKTTMKKAYYLACGFCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKL
               40        50        60        70        80        90

       150       160       170       180       190       200       
pF1KE6 IEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IEYYQQLAQKEKVERDRKKLARRRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKE
              100       110       120       130       140       150

       210       220       230       240       250       260       
pF1KE6 GEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GEDQKEIKIEPAQAVDEVEPLPEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHK
              160       170       180       190       200       210

       270       280       290       300       310       320       
pF1KE6 HLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 HLLIKRSLRCRKCEHNLSKPEFNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLL
              220       230       240       250       260       270

       330       340       350       360       370       380       
pF1KE6 TLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TLTNPVENLTHVTLFECEEGDPDDINSTAKVVVPPKELVLAGKDAAAEYDELAEPQDFQD
              280       290       300       310       320       330

       390       400       410       420       430       440       
pF1KE6 DPDIIAFRKANKVGIFIKVTPQREEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DPDIIAFRKANKVGIFIKVTPQREEGEVTVCFKMKHDFKNLAAPIRPIEESDQGTEVIWL
              340       350       360       370       380       390

       450       460
pF1KE6 TQHVELSLGPLLP
       :::::::::::::
CCDS47 TQHVELSLGPLLP
              400   




460 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:14:15 2016 done: Tue Nov  8 13:14:15 2016
 Total Scan time:  2.730 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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