Result of FASTA (omim) for
pFN21AE2271
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2271, 458 aa
1>>>pF1KE2271 458 - 458 aa - 458 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5665+/-0.000338; mu= 17.3503+/- 0.021
mean_var=85.8757+/-16.832, 0's: 0 Z-trim(115.8): 41 B-trim: 69 in 2/56
Lambda= 0.138401
statistics sampled from 26466 (26507) to 26466 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.311), width: 16
Scan time: 9.960
The best scores are: opt bits E(85289)
NP_000607 (OMIM: 186940,613949) T-cell surface gly ( 458) 3024 613.7 3.2e-175
NP_001181943 (OMIM: 186940,613949) T-cell surface ( 279) 1704 350.0 4.8e-96
XP_016875717 (OMIM: 186940,613949) PREDICTED: T-ce ( 185) 1244 258.0 1.5e-68
NP_001181944 (OMIM: 186940,613949) T-cell surface ( 185) 1244 258.0 1.5e-68
NP_001181946 (OMIM: 186940,613949) T-cell surface ( 185) 1244 258.0 1.5e-68
NP_001181945 (OMIM: 186940,613949) T-cell surface ( 185) 1244 258.0 1.5e-68
>>NP_000607 (OMIM: 186940,613949) T-cell surface glycopr (458 aa)
initn: 3024 init1: 3024 opt: 3024 Z-score: 3266.8 bits: 613.7 E(85289): 3.2e-175
Smith-Waterman score: 3024; 100.0% identity (100.0% similar) in 458 aa overlap (1-458:1-458)
10 20 30 40 50 60
pF1KE2 MNRGVPFRHLLLVLQLALLPAATQGKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MNRGVPFRHLLLVLQLALLPAATQGKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 LVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 TWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 QAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 LEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 LNPEAGMWQCLLSDSGQVLLESNIKVLPTWSTPVQPMALIVLGGVAGLLLFIGLGIFFCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LNPEAGMWQCLLSDSGQVLLESNIKVLPTWSTPVQPMALIVLGGVAGLLLFIGLGIFFCV
370 380 390 400 410 420
430 440 450
pF1KE2 RCRHRRRQAERMSQIKRLLSEKKTCQCPHRFQKTCSPI
::::::::::::::::::::::::::::::::::::::
NP_000 RCRHRRRQAERMSQIKRLLSEKKTCQCPHRFQKTCSPI
430 440 450
>>NP_001181943 (OMIM: 186940,613949) T-cell surface glyc (279 aa)
initn: 1704 init1: 1704 opt: 1704 Z-score: 1845.4 bits: 350.0 E(85289): 4.8e-96
Smith-Waterman score: 1704; 100.0% identity (100.0% similar) in 256 aa overlap (203-458:24-279)
180 190 200 210 220 230
pF1KE2 QLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKL
::::::::::::::::::::::::::::::
NP_001 MPTPLVHPHLPISSPRVSPFPPPAFQKASSIVYKKEGEQVEFSFPLAFTVEKL
10 20 30 40 50
240 250 260 270 280 290
pF1KE2 TGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYA
60 70 80 90 100 110
300 310 320 330 340 350
pF1KE2 GSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVS
120 130 140 150 160 170
360 370 380 390 400 410
pF1KE2 KREKAVWVLNPEAGMWQCLLSDSGQVLLESNIKVLPTWSTPVQPMALIVLGGVAGLLLFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KREKAVWVLNPEAGMWQCLLSDSGQVLLESNIKVLPTWSTPVQPMALIVLGGVAGLLLFI
180 190 200 210 220 230
420 430 440 450
pF1KE2 GLGIFFCVRCRHRRRQAERMSQIKRLLSEKKTCQCPHRFQKTCSPI
::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLGIFFCVRCRHRRRQAERMSQIKRLLSEKKTCQCPHRFQKTCSPI
240 250 260 270
>>XP_016875717 (OMIM: 186940,613949) PREDICTED: T-cell s (185 aa)
initn: 1244 init1: 1244 opt: 1244 Z-score: 1351.4 bits: 258.0 E(85289): 1.5e-68
Smith-Waterman score: 1244; 100.0% identity (100.0% similar) in 185 aa overlap (274-458:1-185)
250 260 270 280 290 300
pF1KE2 RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEA
::::::::::::::::::::::::::::::
XP_016 MGKKLPLHLTLPQALPQYAGSGNLTLALEA
10 20 30
310 320 330 340 350 360
pF1KE2 KTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNP
40 50 60 70 80 90
370 380 390 400 410 420
pF1KE2 EAGMWQCLLSDSGQVLLESNIKVLPTWSTPVQPMALIVLGGVAGLLLFIGLGIFFCVRCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAGMWQCLLSDSGQVLLESNIKVLPTWSTPVQPMALIVLGGVAGLLLFIGLGIFFCVRCR
100 110 120 130 140 150
430 440 450
pF1KE2 HRRRQAERMSQIKRLLSEKKTCQCPHRFQKTCSPI
:::::::::::::::::::::::::::::::::::
XP_016 HRRRQAERMSQIKRLLSEKKTCQCPHRFQKTCSPI
160 170 180
>>NP_001181944 (OMIM: 186940,613949) T-cell surface glyc (185 aa)
initn: 1244 init1: 1244 opt: 1244 Z-score: 1351.4 bits: 258.0 E(85289): 1.5e-68
Smith-Waterman score: 1244; 100.0% identity (100.0% similar) in 185 aa overlap (274-458:1-185)
250 260 270 280 290 300
pF1KE2 RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEA
::::::::::::::::::::::::::::::
NP_001 MGKKLPLHLTLPQALPQYAGSGNLTLALEA
10 20 30
310 320 330 340 350 360
pF1KE2 KTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNP
40 50 60 70 80 90
370 380 390 400 410 420
pF1KE2 EAGMWQCLLSDSGQVLLESNIKVLPTWSTPVQPMALIVLGGVAGLLLFIGLGIFFCVRCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAGMWQCLLSDSGQVLLESNIKVLPTWSTPVQPMALIVLGGVAGLLLFIGLGIFFCVRCR
100 110 120 130 140 150
430 440 450
pF1KE2 HRRRQAERMSQIKRLLSEKKTCQCPHRFQKTCSPI
:::::::::::::::::::::::::::::::::::
NP_001 HRRRQAERMSQIKRLLSEKKTCQCPHRFQKTCSPI
160 170 180
>>NP_001181946 (OMIM: 186940,613949) T-cell surface glyc (185 aa)
initn: 1244 init1: 1244 opt: 1244 Z-score: 1351.4 bits: 258.0 E(85289): 1.5e-68
Smith-Waterman score: 1244; 100.0% identity (100.0% similar) in 185 aa overlap (274-458:1-185)
250 260 270 280 290 300
pF1KE2 RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEA
::::::::::::::::::::::::::::::
NP_001 MGKKLPLHLTLPQALPQYAGSGNLTLALEA
10 20 30
310 320 330 340 350 360
pF1KE2 KTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNP
40 50 60 70 80 90
370 380 390 400 410 420
pF1KE2 EAGMWQCLLSDSGQVLLESNIKVLPTWSTPVQPMALIVLGGVAGLLLFIGLGIFFCVRCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAGMWQCLLSDSGQVLLESNIKVLPTWSTPVQPMALIVLGGVAGLLLFIGLGIFFCVRCR
100 110 120 130 140 150
430 440 450
pF1KE2 HRRRQAERMSQIKRLLSEKKTCQCPHRFQKTCSPI
:::::::::::::::::::::::::::::::::::
NP_001 HRRRQAERMSQIKRLLSEKKTCQCPHRFQKTCSPI
160 170 180
>>NP_001181945 (OMIM: 186940,613949) T-cell surface glyc (185 aa)
initn: 1244 init1: 1244 opt: 1244 Z-score: 1351.4 bits: 258.0 E(85289): 1.5e-68
Smith-Waterman score: 1244; 100.0% identity (100.0% similar) in 185 aa overlap (274-458:1-185)
250 260 270 280 290 300
pF1KE2 RASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEA
::::::::::::::::::::::::::::::
NP_001 MGKKLPLHLTLPQALPQYAGSGNLTLALEA
10 20 30
310 320 330 340 350 360
pF1KE2 KTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNP
40 50 60 70 80 90
370 380 390 400 410 420
pF1KE2 EAGMWQCLLSDSGQVLLESNIKVLPTWSTPVQPMALIVLGGVAGLLLFIGLGIFFCVRCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAGMWQCLLSDSGQVLLESNIKVLPTWSTPVQPMALIVLGGVAGLLLFIGLGIFFCVRCR
100 110 120 130 140 150
430 440 450
pF1KE2 HRRRQAERMSQIKRLLSEKKTCQCPHRFQKTCSPI
:::::::::::::::::::::::::::::::::::
NP_001 HRRRQAERMSQIKRLLSEKKTCQCPHRFQKTCSPI
160 170 180
458 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 00:32:25 2016 done: Mon Nov 7 00:32:26 2016
Total Scan time: 9.960 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]