FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6109, 150 aa 1>>>pF1KE6109 150 - 150 aa - 150 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0402+/-0.000303; mu= 12.7484+/- 0.019 mean_var=56.0798+/-11.393, 0's: 0 Z-trim(116.1): 11 B-trim: 41 in 1/52 Lambda= 0.171266 statistics sampled from 27085 (27087) to 27085 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.318), width: 16 Scan time: 3.170 The best scores are: opt bits E(85289) NP_004246 (OMIM: 603773) cytochrome c oxidase subu ( 150) 999 254.4 5e-68 >>NP_004246 (OMIM: 603773) cytochrome c oxidase subunit (150 aa) initn: 999 init1: 999 opt: 999 Z-score: 1342.2 bits: 254.4 E(85289): 5e-68 Smith-Waterman score: 999; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 pF1KE6 MLGAALRRCAVAATTRADPRGLLHSARTPGPAVAIQSVRCYSHGSQETDEEFDARWVTYF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MLGAALRRCAVAATTRADPRGLLHSARTPGPAVAIQSVRCYSHGSQETDEEFDARWVTYF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 NKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFASTVRILEVVKDKAGPHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 NKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFASTVRILEVVKDKAGPHK 70 80 90 100 110 120 130 140 150 pF1KE6 EIYPYVIQELRPTLNELGISTPEELGLDKV :::::::::::::::::::::::::::::: NP_004 EIYPYVIQELRPTLNELGISTPEELGLDKV 130 140 150 150 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:31:28 2016 done: Tue Nov 8 09:31:28 2016 Total Scan time: 3.170 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]