FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3631, 314 aa 1>>>pF1KE3631 314 - 314 aa - 314 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6561+/-0.000299; mu= 15.4199+/- 0.019 mean_var=81.0189+/-15.518, 0's: 0 Z-trim(118.5): 24 B-trim: 48 in 1/51 Lambda= 0.142489 statistics sampled from 31581 (31605) to 31581 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.371), width: 16 Scan time: 7.360 The best scores are: opt bits E(85289) NP_071933 (OMIM: 609606) ubiquitin-like-conjugatin ( 314) 2123 445.4 6.9e-125 NP_001265641 (OMIM: 609606) ubiquitin-like-conjuga ( 311) 1975 415.0 9.9e-116 XP_011511376 (OMIM: 609606) PREDICTED: ubiquitin-l ( 227) 1531 323.6 2.3e-88 >>NP_071933 (OMIM: 609606) ubiquitin-like-conjugating en (314 aa) initn: 2123 init1: 2123 opt: 2123 Z-score: 2363.1 bits: 445.4 E(85289): 6.9e-125 Smith-Waterman score: 2123; 100.0% identity (100.0% similar) in 314 aa overlap (1-314:1-314) 10 20 30 40 50 60 pF1KE3 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAV 250 260 270 280 290 300 310 pF1KE3 IPTIEYDYTRHFTM :::::::::::::: NP_071 IPTIEYDYTRHFTM 310 >>NP_001265641 (OMIM: 609606) ubiquitin-like-conjugating (311 aa) initn: 2000 init1: 1975 opt: 1975 Z-score: 2198.7 bits: 415.0 E(85289): 9.9e-116 Smith-Waterman score: 1975; 95.4% identity (97.7% similar) in 306 aa overlap (1-306:1-306) 10 20 30 40 50 60 pF1KE3 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAV ::::::::::::::::::::::::::::::::::::::::::::::::: .....: NP_001 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYPSLYVRLVAKW 250 260 270 280 290 300 310 pF1KE3 IPTIEYDYTRHFTM . :: . NP_001 LLTIFFLRNLV 310 >>XP_011511376 (OMIM: 609606) PREDICTED: ubiquitin-like- (227 aa) initn: 1531 init1: 1531 opt: 1531 Z-score: 1707.4 bits: 323.6 E(85289): 2.3e-88 Smith-Waterman score: 1531; 100.0% identity (100.0% similar) in 227 aa overlap (88-314:1-227) 60 70 80 90 100 110 pF1KE3 GEELKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGIT :::::::::::::::::::::::::::::: XP_011 MEYSDELEAIIEEDDGDGGWVDTYHNTGIT 10 20 30 120 130 140 150 160 170 pF1KE3 GITEAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GITEAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRK 40 50 60 70 80 90 180 190 200 210 220 230 pF1KE3 IVEACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IVEACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDIS 100 110 120 130 140 150 240 250 260 270 280 290 pF1KE3 QDHVKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QDHVKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFV 160 170 180 190 200 210 300 310 pF1KE3 QAVIPTIEYDYTRHFTM ::::::::::::::::: XP_011 QAVIPTIEYDYTRHFTM 220 314 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:34:40 2016 done: Mon Nov 7 00:34:41 2016 Total Scan time: 7.360 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]