Result of FASTA (omim) for pFN21AE3631
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3631, 314 aa
  1>>>pF1KE3631 314 - 314 aa - 314 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6561+/-0.000299; mu= 15.4199+/- 0.019
 mean_var=81.0189+/-15.518, 0's: 0 Z-trim(118.5): 24  B-trim: 48 in 1/51
 Lambda= 0.142489
 statistics sampled from 31581 (31605) to 31581 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.371), width:  16
 Scan time:  7.360

The best scores are:                                      opt bits E(85289)
NP_071933 (OMIM: 609606) ubiquitin-like-conjugatin ( 314) 2123 445.4 6.9e-125
NP_001265641 (OMIM: 609606) ubiquitin-like-conjuga ( 311) 1975 415.0 9.9e-116
XP_011511376 (OMIM: 609606) PREDICTED: ubiquitin-l ( 227) 1531 323.6 2.3e-88


>>NP_071933 (OMIM: 609606) ubiquitin-like-conjugating en  (314 aa)
 initn: 2123 init1: 2123 opt: 2123  Z-score: 2363.1  bits: 445.4 E(85289): 6.9e-125
Smith-Waterman score: 2123; 100.0% identity (100.0% similar) in 314 aa overlap (1-314:1-314)

               10        20        30        40        50        60
pF1KE3 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAV
              250       260       270       280       290       300

              310    
pF1KE3 IPTIEYDYTRHFTM
       ::::::::::::::
NP_071 IPTIEYDYTRHFTM
              310    

>>NP_001265641 (OMIM: 609606) ubiquitin-like-conjugating  (311 aa)
 initn: 2000 init1: 1975 opt: 1975  Z-score: 2198.7  bits: 415.0 E(85289): 9.9e-116
Smith-Waterman score: 1975; 95.4% identity (97.7% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KE3 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAV
       :::::::::::::::::::::::::::::::::::::::::::::::::  .....:   
NP_001 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYPSLYVRLVAKW
              250       260       270       280       290       300

              310    
pF1KE3 IPTIEYDYTRHFTM
       . :: .        
NP_001 LLTIFFLRNLV   
              310    

>>XP_011511376 (OMIM: 609606) PREDICTED: ubiquitin-like-  (227 aa)
 initn: 1531 init1: 1531 opt: 1531  Z-score: 1707.4  bits: 323.6 E(85289): 2.3e-88
Smith-Waterman score: 1531; 100.0% identity (100.0% similar) in 227 aa overlap (88-314:1-227)

        60        70        80        90       100       110       
pF1KE3 GEELKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGIT
                                     ::::::::::::::::::::::::::::::
XP_011                               MEYSDELEAIIEEDDGDGGWVDTYHNTGIT
                                             10        20        30

       120       130       140       150       160       170       
pF1KE3 GITEAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GITEAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRK
               40        50        60        70        80        90

       180       190       200       210       220       230       
pF1KE3 IVEACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IVEACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDIS
              100       110       120       130       140       150

       240       250       260       270       280       290       
pF1KE3 QDHVKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QDHVKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFV
              160       170       180       190       200       210

       300       310    
pF1KE3 QAVIPTIEYDYTRHFTM
       :::::::::::::::::
XP_011 QAVIPTIEYDYTRHFTM
              220       




314 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:34:40 2016 done: Mon Nov  7 00:34:41 2016
 Total Scan time:  7.360 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com