Result of FASTA (ccds) for pFN21AE3631
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3631, 314 aa
  1>>>pF1KE3631 314 - 314 aa - 314 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9954+/-0.000723; mu= 13.1533+/- 0.044
 mean_var=80.0998+/-15.358, 0's: 0 Z-trim(110.8): 12  B-trim: 6 in 1/51
 Lambda= 0.143304
 statistics sampled from 11891 (11902) to 11891 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.366), width:  16
 Scan time:  2.120

The best scores are:                                      opt bits E(32554)
CCDS2966.1 ATG3 gene_id:64422|Hs108|chr3           ( 314) 2123 447.9 4.6e-126
CCDS63721.1 ATG3 gene_id:64422|Hs108|chr3          ( 311) 1975 417.3 7.4e-117


>>CCDS2966.1 ATG3 gene_id:64422|Hs108|chr3                (314 aa)
 initn: 2123 init1: 2123 opt: 2123  Z-score: 2376.7  bits: 447.9 E(32554): 4.6e-126
Smith-Waterman score: 2123; 100.0% identity (100.0% similar) in 314 aa overlap (1-314:1-314)

               10        20        30        40        50        60
pF1KE3 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAV
              250       260       270       280       290       300

              310    
pF1KE3 IPTIEYDYTRHFTM
       ::::::::::::::
CCDS29 IPTIEYDYTRHFTM
              310    

>>CCDS63721.1 ATG3 gene_id:64422|Hs108|chr3               (311 aa)
 initn: 2000 init1: 1975 opt: 1975  Z-score: 2211.4  bits: 417.3 E(32554): 7.4e-117
Smith-Waterman score: 1975; 95.4% identity (97.7% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KE3 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAV
       :::::::::::::::::::::::::::::::::::::::::::::::::  .....:   
CCDS63 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYPSLYVRLVAKW
              250       260       270       280       290       300

              310    
pF1KE3 IPTIEYDYTRHFTM
       . :: .        
CCDS63 LLTIFFLRNLV   
              310    




314 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:34:39 2016 done: Mon Nov  7 00:34:40 2016
 Total Scan time:  2.120 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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