FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3631, 314 aa 1>>>pF1KE3631 314 - 314 aa - 314 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9954+/-0.000723; mu= 13.1533+/- 0.044 mean_var=80.0998+/-15.358, 0's: 0 Z-trim(110.8): 12 B-trim: 6 in 1/51 Lambda= 0.143304 statistics sampled from 11891 (11902) to 11891 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.366), width: 16 Scan time: 2.120 The best scores are: opt bits E(32554) CCDS2966.1 ATG3 gene_id:64422|Hs108|chr3 ( 314) 2123 447.9 4.6e-126 CCDS63721.1 ATG3 gene_id:64422|Hs108|chr3 ( 311) 1975 417.3 7.4e-117 >>CCDS2966.1 ATG3 gene_id:64422|Hs108|chr3 (314 aa) initn: 2123 init1: 2123 opt: 2123 Z-score: 2376.7 bits: 447.9 E(32554): 4.6e-126 Smith-Waterman score: 2123; 100.0% identity (100.0% similar) in 314 aa overlap (1-314:1-314) 10 20 30 40 50 60 pF1KE3 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAV 250 260 270 280 290 300 310 pF1KE3 IPTIEYDYTRHFTM :::::::::::::: CCDS29 IPTIEYDYTRHFTM 310 >>CCDS63721.1 ATG3 gene_id:64422|Hs108|chr3 (311 aa) initn: 2000 init1: 1975 opt: 1975 Z-score: 2211.4 bits: 417.3 E(32554): 7.4e-117 Smith-Waterman score: 1975; 95.4% identity (97.7% similar) in 306 aa overlap (1-306:1-306) 10 20 30 40 50 60 pF1KE3 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 LKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDDGDGGWVDTYHNTGITGIT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 EAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEYEESGLLETDEATLDTRKIVE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 ACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDEQRQPLTVEHMYEDISQDH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYLLIFLKFVQAV ::::::::::::::::::::::::::::::::::::::::::::::::: .....: CCDS63 VKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIETVAEGGGELGVHMYPSLYVRLVAKW 250 260 270 280 290 300 310 pF1KE3 IPTIEYDYTRHFTM . :: . CCDS63 LLTIFFLRNLV 310 314 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:34:39 2016 done: Mon Nov 7 00:34:40 2016 Total Scan time: 2.120 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]