FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5301, 260 aa 1>>>pF1KE5301 260 - 260 aa - 260 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.2894+/-0.000269; mu= 21.3514+/- 0.017 mean_var=64.3201+/-13.146, 0's: 0 Z-trim(120.2): 10 B-trim: 1947 in 1/56 Lambda= 0.159919 statistics sampled from 35211 (35221) to 35211 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.413), width: 16 Scan time: 5.790 The best scores are: opt bits E(85289) NP_665813 (OMIM: 606898) voltage-dependent calcium ( 260) 1760 413.8 1.6e-115 XP_006723379 (OMIM: 606898) PREDICTED: voltage-dep ( 189) 1207 286.1 3.3e-77 NP_665814 (OMIM: 606898) voltage-dependent calcium ( 214) 919 219.7 3.6e-57 NP_114103 (OMIM: 606898) voltage-dependent calcium ( 189) 752 181.1 1.3e-45 NP_000718 (OMIM: 114209) voltage-dependent calcium ( 222) 559 136.6 3.7e-32 >>NP_665813 (OMIM: 606898) voltage-dependent calcium cha (260 aa) initn: 1760 init1: 1760 opt: 1760 Z-score: 2195.1 bits: 413.8 E(85289): 1.6e-115 Smith-Waterman score: 1760; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260) 10 20 30 40 50 60 pF1KE5 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_665 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_665 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_665 TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 SGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_665 SGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL 190 200 210 220 230 240 250 260 pF1KE5 LTLPSWPWGSLCPKRGHRAT :::::::::::::::::::: NP_665 LTLPSWPWGSLCPKRGHRAT 250 260 >>XP_006723379 (OMIM: 606898) PREDICTED: voltage-depende (189 aa) initn: 1204 init1: 1204 opt: 1207 Z-score: 1507.2 bits: 286.1 E(85289): 3.3e-77 Smith-Waterman score: 1207; 97.8% identity (98.9% similar) in 186 aa overlap (1-186:1-186) 10 20 30 40 50 60 pF1KE5 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 SGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL :. .: XP_006 SASQMLPAI >>NP_665814 (OMIM: 606898) voltage-dependent calcium cha (214 aa) initn: 1460 init1: 918 opt: 919 Z-score: 1147.5 bits: 219.7 E(85289): 3.6e-57 Smith-Waterman score: 1372; 82.3% identity (82.3% similar) in 260 aa overlap (1-260:1-214) 10 20 30 40 50 60 pF1KE5 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_665 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_665 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL ::::::::::::::: NP_665 TTGENARIFQRTTKK--------------------------------------------- 130 190 200 210 220 230 240 pF1KE5 SGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_665 -GLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL 140 150 160 170 180 190 250 260 pF1KE5 LTLPSWPWGSLCPKRGHRAT :::::::::::::::::::: NP_665 LTLPSWPWGSLCPKRGHRAT 200 210 >>NP_114103 (OMIM: 606898) voltage-dependent calcium cha (189 aa) initn: 1294 init1: 752 opt: 752 Z-score: 939.9 bits: 181.1 E(85289): 1.3e-45 Smith-Waterman score: 1156; 72.7% identity (72.7% similar) in 260 aa overlap (1-260:1-189) 10 20 30 40 50 60 pF1KE5 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF :::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPG---------- 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL NP_114 ------------------------------------------------------------ 190 200 210 220 230 240 pF1KE5 SGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_114 -GLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL 120 130 140 150 160 250 260 pF1KE5 LTLPSWPWGSLCPKRGHRAT :::::::::::::::::::: NP_114 LTLPSWPWGSLCPKRGHRAT 170 180 >>NP_000718 (OMIM: 114209) voltage-dependent calcium cha (222 aa) initn: 584 init1: 328 opt: 559 Z-score: 698.4 bits: 136.6 E(85289): 3.7e-32 Smith-Waterman score: 559; 39.7% identity (72.6% similar) in 219 aa overlap (38-252:8-215) 10 20 30 40 50 60 pF1KE5 LQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTEFWVELNT ::...:. .: .::. .: :. :. :. NP_000 MSQTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSP 10 20 30 70 80 90 100 110 120 pF1KE5 YKANGSAVCEAAHLGLWKACTKRLWQADVPVDRD-TCGPAELPGEANCTYFKFFTTGENA . . ...:::::.:::. :::: .:.: . :::: :::: ::.::. :. ::.. NP_000 HMEHHNTTCEAAHFGLWRICTKR-----IPMDDSKTCGPITLPGEKNCSYFRHFNPGESS 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 RIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGLSGLLLL .::. ::.:: ...::.::...:. . :: ::... :.: ..::: ... ....:: .: NP_000 EIFEFTTQKEYSISAAAIAIFSLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCIL 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 VSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLLTLPSW ::.::.:.::. .. . . . : ::::..:. .: ..:.::. .::..:: NP_000 VSVEVMRQSVKRMI-----DSEDTVWIEYYYSWSFACACAAFILLFLGGLALLLFSLPRM 160 170 180 190 200 250 260 pF1KE5 P---WGSLCPKRGHRAT : : : : NP_000 PRNPWES-CMDAEPEH 210 220 260 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:28:33 2016 done: Tue Nov 8 07:28:34 2016 Total Scan time: 5.790 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]