FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5301, 260 aa 1>>>pF1KE5301 260 - 260 aa - 260 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.2838+/-0.000569; mu= 21.5925+/- 0.035 mean_var=66.3274+/-13.239, 0's: 0 Z-trim(113.5): 12 B-trim: 0 in 0/53 Lambda= 0.157481 statistics sampled from 14103 (14114) to 14103 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.434), width: 16 Scan time: 2.310 The best scores are: opt bits E(32554) CCDS12870.1 CACNG6 gene_id:59285|Hs108|chr19 ( 260) 1760 407.6 4.3e-114 CCDS12871.1 CACNG6 gene_id:59285|Hs108|chr19 ( 214) 919 216.5 1.2e-56 CCDS11668.1 CACNG1 gene_id:786|Hs108|chr17 ( 222) 559 134.7 5.3e-32 >>CCDS12870.1 CACNG6 gene_id:59285|Hs108|chr19 (260 aa) initn: 1760 init1: 1760 opt: 1760 Z-score: 2161.8 bits: 407.6 E(32554): 4.3e-114 Smith-Waterman score: 1760; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260) 10 20 30 40 50 60 pF1KE5 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 SGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL 190 200 210 220 230 240 250 260 pF1KE5 LTLPSWPWGSLCPKRGHRAT :::::::::::::::::::: CCDS12 LTLPSWPWGSLCPKRGHRAT 250 260 >>CCDS12871.1 CACNG6 gene_id:59285|Hs108|chr19 (214 aa) initn: 1460 init1: 918 opt: 919 Z-score: 1130.2 bits: 216.5 E(32554): 1.2e-56 Smith-Waterman score: 1372; 82.3% identity (82.3% similar) in 260 aa overlap (1-260:1-214) 10 20 30 40 50 60 pF1KE5 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MMWSNFFLQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 FWVELNTYKANGSAVCEAAHLGLWKACTKRLWQADVPVDRDTCGPAELPGEANCTYFKFF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TTGENARIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGL ::::::::::::::: CCDS12 TTGENARIFQRTTKK--------------------------------------------- 130 190 200 210 220 230 240 pF1KE5 SGLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 -GLLLLVSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLL 140 150 160 170 180 190 250 260 pF1KE5 LTLPSWPWGSLCPKRGHRAT :::::::::::::::::::: CCDS12 LTLPSWPWGSLCPKRGHRAT 200 210 >>CCDS11668.1 CACNG1 gene_id:786|Hs108|chr17 (222 aa) initn: 584 init1: 328 opt: 559 Z-score: 688.0 bits: 134.7 E(32554): 5.3e-32 Smith-Waterman score: 559; 39.7% identity (72.6% similar) in 219 aa overlap (38-252:8-215) 10 20 30 40 50 60 pF1KE5 LQEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTEFWVELNT ::...:. .: .::. .: :. :. :. CCDS11 MSQTKMLKVRVTLFCILAGIVLAMTAVVTDHWAVLSP 10 20 30 70 80 90 100 110 120 pF1KE5 YKANGSAVCEAAHLGLWKACTKRLWQADVPVDRD-TCGPAELPGEANCTYFKFFTTGENA . . ...:::::.:::. :::: .:.: . :::: :::: ::.::. :. ::.. CCDS11 HMEHHNTTCEAAHFGLWRICTKR-----IPMDDSKTCGPITLPGEKNCSYFRHFNPGESS 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 RIFQRTTKKEVNLAAAVIAVLGLAVMALGCLCIIMVLSKGAEFLLRVGAVCFGLSGLLLL .::. ::.:: ...::.::...:. . :: ::... :.: ..::: ... ....:: .: CCDS11 EIFEFTTQKEYSISAAAIAIFSLGFIILGSLCVLLSLGKKRDYLLRPASMFYAFAGLCIL 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 VSLEVFRHSVRALLQRVSPEPPPAPRLTYEYSWSLGCGVGAGLILLLGAGCFLLLTLPSW ::.::.:.::. .. . . . : ::::..:. .: ..:.::. .::..:: CCDS11 VSVEVMRQSVKRMI-----DSEDTVWIEYYYSWSFACACAAFILLFLGGLALLLFSLPRM 160 170 180 190 200 250 260 pF1KE5 P---WGSLCPKRGHRAT : : : : CCDS11 PRNPWES-CMDAEPEH 210 220 260 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:28:32 2016 done: Tue Nov 8 07:28:33 2016 Total Scan time: 2.310 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]