FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5502, 394 aa 1>>>pF1KE5502 394 - 394 aa - 394 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1331+/-0.000316; mu= 14.6301+/- 0.020 mean_var=102.1329+/-20.039, 0's: 0 Z-trim(118.2): 12 B-trim: 0 in 0/54 Lambda= 0.126909 statistics sampled from 30882 (30890) to 30882 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.362), width: 16 Scan time: 9.190 The best scores are: opt bits E(85289) NP_115553 (OMIM: 604924) phosphorylated adapter RN ( 394) 2583 483.1 5e-136 >>NP_115553 (OMIM: 604924) phosphorylated adapter RNA ex (394 aa) initn: 2583 init1: 2583 opt: 2583 Z-score: 2563.1 bits: 483.1 E(85289): 5e-136 Smith-Waterman score: 2583; 100.0% identity (100.0% similar) in 394 aa overlap (1-394:1-394) 10 20 30 40 50 60 pF1KE5 MALEVGDMEDGQLSDSDSDMTVAPSDRPLQLPKVLGGDSAMRAFQNTATACAPVSHYRAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 MALEVGDMEDGQLSDSDSDMTVAPSDRPLQLPKVLGGDSAMRAFQNTATACAPVSHYRAV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 ESVDSSEESFSDSDDDSCLWKRKRQKCFNPPPKPEPFQFGQSSQKPPVAGGKKINNIWGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 ESVDSSEESFSDSDDDSCLWKRKRQKCFNPPPKPEPFQFGQSSQKPPVAGGKKINNIWGA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 VLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHTKDLDKELDEYMH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 GGKKMGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 GGKKMGSKEEENGQGHLKRKRPVKDRLGNRPEMNYKGRYEITAEDSQEKVADEISFRLQE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 PKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 PKKDLIARVVRIIGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVFLNLLKNTPSIS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 EEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTSRETFASDTNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_115 EEQIKDIFYIENQKEYENKKAARKRRTQVLGKKMKQAIKSLNFQEDDDTSRETFASDTNE 310 320 330 340 350 360 370 380 390 pF1KE5 ALASLDESQEGHAEAKLEAEEAIEVDHSHDLDIF :::::::::::::::::::::::::::::::::: NP_115 ALASLDESQEGHAEAKLEAEEAIEVDHSHDLDIF 370 380 390 394 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:17:13 2016 done: Tue Nov 8 01:17:14 2016 Total Scan time: 9.190 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]