FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6130, 141 aa 1>>>pF1KE6130 141 - 141 aa - 141 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7725+/-0.000341; mu= 8.7878+/- 0.021 mean_var=65.4403+/-13.749, 0's: 0 Z-trim(114.8): 29 B-trim: 488 in 1/52 Lambda= 0.158545 statistics sampled from 24843 (24872) to 24843 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.292), width: 16 Scan time: 4.710 The best scores are: opt bits E(85289) NP_001317198 (OMIM: 603193) ATP synthase F(0) comp ( 141) 868 206.9 8.9e-54 NP_001002031 (OMIM: 603193) ATP synthase F(0) comp ( 157) 868 206.9 9.9e-54 XP_016874950 (OMIM: 603193) PREDICTED: ATP synthas ( 157) 868 206.9 9.9e-54 XP_016874949 (OMIM: 603193) PREDICTED: ATP synthas ( 198) 868 206.9 1.2e-53 NP_005167 (OMIM: 603193) ATP synthase F(0) complex ( 198) 868 206.9 1.2e-53 NP_001680 (OMIM: 602736) ATP synthase F(0) complex ( 142) 638 154.3 6.2e-38 NP_001002258 (OMIM: 602736) ATP synthase F(0) comp ( 142) 638 154.3 6.2e-38 NP_005166 (OMIM: 603192) ATP synthase F(0) complex ( 136) 567 138.0 4.6e-33 NP_001002027 (OMIM: 603192) ATP synthase F(0) comp ( 136) 567 138.0 4.6e-33 NP_001177258 (OMIM: 602736) ATP synthase F(0) comp ( 105) 402 100.3 8.3e-22 >>NP_001317198 (OMIM: 603193) ATP synthase F(0) complex (141 aa) initn: 868 init1: 868 opt: 868 Z-score: 1086.4 bits: 206.9 E(85289): 8.9e-54 Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF 70 80 90 100 110 120 130 140 pF1KE6 ALSEAMGLFCLMVAFLILFAM ::::::::::::::::::::: NP_001 ALSEAMGLFCLMVAFLILFAM 130 140 >>NP_001002031 (OMIM: 603193) ATP synthase F(0) complex (157 aa) initn: 868 init1: 868 opt: 868 Z-score: 1085.7 bits: 206.9 E(85289): 9.9e-54 Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:17-157) 10 20 30 40 pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSL :::::::::::::::::::::::::::::::::::::::::::: NP_001 MPELILSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSL 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE6 AVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR 70 80 90 100 110 120 110 120 130 140 pF1KE6 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM ::::::::::::::::::::::::::::::::::::: NP_001 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM 130 140 150 >>XP_016874950 (OMIM: 603193) PREDICTED: ATP synthase F( (157 aa) initn: 868 init1: 868 opt: 868 Z-score: 1085.7 bits: 206.9 E(85289): 9.9e-54 Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:17-157) 10 20 30 40 pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSL :::::::::::::::::::::::::::::::::::::::::::: XP_016 MPELILSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSL 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE6 AVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR 70 80 90 100 110 120 110 120 130 140 pF1KE6 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM ::::::::::::::::::::::::::::::::::::: XP_016 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM 130 140 150 >>XP_016874949 (OMIM: 603193) PREDICTED: ATP synthase F( (198 aa) initn: 868 init1: 868 opt: 868 Z-score: 1084.0 bits: 206.9 E(85289): 1.2e-53 Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:58-198) 10 20 30 pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVL :::::::::::::::::::::::::::::: XP_016 PSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVL 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE6 KRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAG 90 100 110 120 130 140 100 110 120 130 140 pF1KE6 IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM ::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM 150 160 170 180 190 >>NP_005167 (OMIM: 603193) ATP synthase F(0) complex sub (198 aa) initn: 868 init1: 868 opt: 868 Z-score: 1084.0 bits: 206.9 E(85289): 1.2e-53 Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:58-198) 10 20 30 pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVL :::::::::::::::::::::::::::::: NP_005 PSFRSSRCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVL 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE6 KRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 KRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAG 90 100 110 120 130 140 100 110 120 130 140 pF1KE6 IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM 150 160 170 180 190 >>NP_001680 (OMIM: 602736) ATP synthase F(0) complex sub (142 aa) initn: 645 init1: 525 opt: 638 Z-score: 802.1 bits: 154.3 E(85289): 6.2e-38 Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-141:1-142) 10 20 30 40 50 pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSSLAVSCPLTSLVSSRSF ::::.:.. ::::... :.. ::.:: ::.::: : :. . . . .: . .: : NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 70 80 90 100 110 120 120 130 140 pF1KE6 FALSEAMGLFCLMVAFLILFAM :::::::::::::::::::::: NP_001 FALSEAMGLFCLMVAFLILFAM 130 140 >>NP_001002258 (OMIM: 602736) ATP synthase F(0) complex (142 aa) initn: 645 init1: 525 opt: 638 Z-score: 802.1 bits: 154.3 E(85289): 6.2e-38 Smith-Waterman score: 638; 74.6% identity (86.6% similar) in 142 aa overlap (1-141:1-142) 10 20 30 40 50 pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSSLAVSCPLTSLVSSRSF ::::.:.. ::::... :.. ::.:: ::.::: : :. . . . .: . .: : NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 70 80 90 100 110 120 120 130 140 pF1KE6 FALSEAMGLFCLMVAFLILFAM :::::::::::::::::::::: NP_001 FALSEAMGLFCLMVAFLILFAM 130 140 >>NP_005166 (OMIM: 603192) ATP synthase F(0) complex sub (136 aa) initn: 548 init1: 523 opt: 567 Z-score: 714.6 bits: 138.0 E(85289): 4.6e-33 Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (7-141:8-136) 10 20 30 40 50 pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSF :.: :.:.. .. : ::.:: :. : .. : . . :: :. : : NP_005 MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---VNSSKQPSYSNFPLQ--VARREF 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG :::..::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 60 70 80 90 100 110 120 130 140 pF1KE6 FALSEAMGLFCLMVAFLILFAM :::::::::::::::::::::: NP_005 FALSEAMGLFCLMVAFLILFAM 120 130 >>NP_001002027 (OMIM: 603192) ATP synthase F(0) complex (136 aa) initn: 548 init1: 523 opt: 567 Z-score: 714.6 bits: 138.0 E(85289): 4.6e-33 Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (7-141:8-136) 10 20 30 40 50 pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSF :.: :.:.. .. : ::.:: :. : .. : . . :: :. : : NP_001 MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---VNSSKQPSYSNFPLQ--VARREF 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG :::..::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 60 70 80 90 100 110 120 130 140 pF1KE6 FALSEAMGLFCLMVAFLILFAM :::::::::::::::::::::: NP_001 FALSEAMGLFCLMVAFLILFAM 120 130 >>NP_001177258 (OMIM: 602736) ATP synthase F(0) complex (105 aa) initn: 409 init1: 289 opt: 402 Z-score: 512.5 bits: 100.3 E(85289): 8.3e-22 Smith-Waterman score: 402; 65.7% identity (81.9% similar) in 105 aa overlap (1-104:1-105) 10 20 30 40 50 pF1KE6 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL-TDESLSSLAVSCPLTSLVSSRSF ::::.:.. ::::... :.. ::.:: ::.::: : :. . . . .: . .: : NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG ::::::::::::::::::::::::::::::::::::::::::::: NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR 70 80 90 100 120 130 140 pF1KE6 FALSEAMGLFCLMVAFLILFAM 141 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:43:07 2016 done: Tue Nov 8 09:43:08 2016 Total Scan time: 4.710 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]