FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4321, 325 aa
  1>>>pF1KE4321 325 - 325 aa - 325 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0988+/-0.0003; mu= 18.2650+/- 0.019
 mean_var=80.1233+/-16.047, 0's: 0 Z-trim(118.4): 3  B-trim: 0 in 0/54
 Lambda= 0.143283
 statistics sampled from 31254 (31257) to 31254 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.366), width:  16
 Scan time:  8.500

The best scores are:                                      opt bits E(85289)
NP_001907 (OMIM: 123980,615453) cytochrome c1, hem ( 325) 2206 465.1 8.8e-131
XP_016868591 (OMIM: 123980,615453) PREDICTED: cyto ( 357) 1599 339.7 5.6e-93


>>NP_001907 (OMIM: 123980,615453) cytochrome c1, heme pr  (325 aa)
 initn: 2206 init1: 2206 opt: 2206  Z-score: 2469.0  bits: 465.1 E(85289): 8.8e-131
Smith-Waterman score: 2206; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KE4 MAAAAASLRGVVLGPRGAGLPGARARGLLCSARPGQLPLRTPQAVALSSKSGLSRGRKVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAAAASLRGVVLGPRGAGLPGARARGLLCSARPGQLPLRTPQAVALSSKSGLSRGRKVM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LSALGMLAAGGAGLAVALHSAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSALGMLAAGGAGLAVALHSAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 CASCHSMDFVAYRHLVGVCYTEDEAKELAAEVEVQDGPNEDGEMFMRPGKLFDYFPKPYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CASCHSMDFVAYRHLVGVCYTEDEAKELAAEVEVQDGPNEDGEMFMRPGKLFDYFPKPYP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 NSEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 AIAMAPPIYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIAMAPPIYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLV
              250       260       270       280       290       300

              310       320     
pF1KE4 PLVYTIKRHKWSVLKSRKLAYRPPK
       :::::::::::::::::::::::::
NP_001 PLVYTIKRHKWSVLKSRKLAYRPPK
              310       320     

>>XP_016868591 (OMIM: 123980,615453) PREDICTED: cytochro  (357 aa)
 initn: 1599 init1: 1599 opt: 1599  Z-score: 1790.3  bits: 339.7 E(85289): 5.6e-93
Smith-Waterman score: 1599; 99.1% identity (100.0% similar) in 233 aa overlap (60-292:1-233)

      30        40        50        60        70        80         
pF1KE4 CSARPGQLPLRTPQAVALSSKSGLSRGRKVMLSALGMLAAGGAGLAVALHSAVSASDLEL
                                     ::::::::::::::::.:::::::::::::
XP_016                               MLSALGMLAAGGAGLAMALHSAVSASDLEL
                                             10        20        30

      90       100       110       120       130       140         
pF1KE4 HPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSMDFVAYRHLVGVCYTEDEAKELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSMDFVAYRHLVGVCYTEDEAKELA
               40        50        60        70        80        90

     150       160       170       180       190       200         
pF1KE4 AEVEVQDGPNEDGEMFMRPGKLFDYFPKPYPNSEAARAANNGALPPDLSYIVRARHGGED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEVEVQDGPNEDGEMFMRPGKLFDYFPKPYPNSEAARAANNGALPPDLSYIVRARHGGED
              100       110       120       130       140       150

     210       220       230       240       250       260         
pF1KE4 YVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGTPATMSQIAKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGTPATMSQIAKD
              160       170       180       190       200       210

     270       280       290       300       310       320         
pF1KE4 VCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRPPK    
       ::::::::::::::::::::::.                                     
XP_016 VCTFLRWASEPEHDHRKRMGLKVKGLGGHGGYQRRAGSWAGLLPTPFSEPSLSADVDDDG
              220       230       240       250       260       270




325 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:10:42 2016 done: Sat Nov  5 23:10:43 2016
 Total Scan time:  8.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]