Result of FASTA (omim) for pFN21AE5508
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5508, 437 aa
  1>>>pF1KE5508 437 - 437 aa - 437 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4681+/-0.000371; mu= 17.7440+/- 0.023
 mean_var=87.1013+/-17.452, 0's: 0 Z-trim(115.2): 49  B-trim: 467 in 1/51
 Lambda= 0.137424
 statistics sampled from 25479 (25527) to 25479 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.299), width:  16
 Scan time:  8.530

The best scores are:                                      opt bits E(85289)
NP_005693 (OMIM: 607435) GTPase Era, mitochondrial ( 437) 2918 588.5 1.1e-167
NP_001304914 (OMIM: 607435) GTPase Era, mitochondr ( 436) 2901 585.2 1.1e-166
NP_001304915 (OMIM: 607435) GTPase Era, mitochondr ( 354) 1580 323.2 6.8e-88
NP_060796 (OMIM: 608087) GTPase IMAP family member ( 329)  166 42.8  0.0016
XP_005250074 (OMIM: 608087) PREDICTED: GTPase IMAP ( 343)  166 42.8  0.0016
NP_598399 (OMIM: 608536,616198) tRNA modification  ( 524)  164 42.6   0.003


>>NP_005693 (OMIM: 607435) GTPase Era, mitochondrial iso  (437 aa)
 initn: 2918 init1: 2918 opt: 2918  Z-score: 3131.4  bits: 588.5 E(85289): 1.1e-167
Smith-Waterman score: 2918; 100.0% identity (100.0% similar) in 437 aa overlap (1-437:1-437)

               10        20        30        40        50        60
pF1KE5 MAAPSWRGARLVQSVLRVWQVGPHVARERVIPFSSLLGFQRRCVSCVAGSAFSGPRLASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAAPSWRGARLVQSVLRVWQVGPHVARERVIPFSSLLGFQRRCVSCVAGSAFSGPRLASA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SRSNGQGSALDHFLGFSQPDSSVTPCVPAVSMNRDEQDVLLVHHPDMPENSRVLRVVLLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SRSNGQGSALDHFLGFSQPDSSVTPCVPAVSMNRDEQDVLLVHHPDMPENSRVLRVVLLG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 APNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQVILLDTPGIISPGKQKRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 APNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQVILLDTPGIISPGKQKRH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 HLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRCLTKYSQIPSVLVMNKVDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 HLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRCLTKYSQIPSVLVMNKVDC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 LKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPSPAVKDPNTQSVGNPQRIGWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPSPAVKDPNTQSVGNPQRIGWP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 HFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQTPEEICANIIREKLLEHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 HFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQTPEEICANIIREKLLEHL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 PQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIGPKGHVISQIAQEAGHDLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIGPKGHVISQIAQEAGHDLM
              370       380       390       400       410       420

              430       
pF1KE5 DIFLCDVDIRLSVKLLK
       :::::::::::::::::
NP_005 DIFLCDVDIRLSVKLLK
              430       

>>NP_001304914 (OMIM: 607435) GTPase Era, mitochondrial   (436 aa)
 initn: 1829 init1: 1829 opt: 2901  Z-score: 3113.2  bits: 585.2 E(85289): 1.1e-166
Smith-Waterman score: 2901; 99.8% identity (99.8% similar) in 437 aa overlap (1-437:1-436)

               10        20        30        40        50        60
pF1KE5 MAAPSWRGARLVQSVLRVWQVGPHVARERVIPFSSLLGFQRRCVSCVAGSAFSGPRLASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAPSWRGARLVQSVLRVWQVGPHVARERVIPFSSLLGFQRRCVSCVAGSAFSGPRLASA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SRSNGQGSALDHFLGFSQPDSSVTPCVPAVSMNRDEQDVLLVHHPDMPENSRVLRVVLLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRSNGQGSALDHFLGFSQPDSSVTPCVPAVSMNRDEQDVLLVHHPDMPENSRVLRVVLLG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 APNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQVILLDTPGIISPGKQKRH
       :::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::
NP_001 APNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQ-ILLDTPGIISPGKQKRH
              130       140       150       160        170         

              190       200       210       220       230       240
pF1KE5 HLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRCLTKYSQIPSVLVMNKVDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRCLTKYSQIPSVLVMNKVDC
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KE5 LKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPSPAVKDPNTQSVGNPQRIGWP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPSPAVKDPNTQSVGNPQRIGWP
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KE5 HFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQTPEEICANIIREKLLEHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQTPEEICANIIREKLLEHL
     300       310       320       330       340       350         

              370       380       390       400       410       420
pF1KE5 PQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIGPKGHVISQIAQEAGHDLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIGPKGHVISQIAQEAGHDLM
     360       370       380       390       400       410         

              430       
pF1KE5 DIFLCDVDIRLSVKLLK
       :::::::::::::::::
NP_001 DIFLCDVDIRLSVKLLK
     420       430      

>>NP_001304915 (OMIM: 607435) GTPase Era, mitochondrial   (354 aa)
 initn: 1577 init1: 1577 opt: 1580  Z-score: 1699.0  bits: 323.2 E(85289): 6.8e-88
Smith-Waterman score: 2181; 81.0% identity (81.0% similar) in 437 aa overlap (1-437:1-354)

               10        20        30        40        50        60
pF1KE5 MAAPSWRGARLVQSVLRVWQVGPHVARERVIPFSSLLGFQRRCVSCVAGSAFSGPRLASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAAPSWRGARLVQSVLRVWQVGPHVARERVIPFSSLLGFQRRCVSCVAGSAFSGPRLASA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 SRSNGQGSALDHFLGFSQPDSSVTPCVPAVSMNRDEQDVLLVHHPDMPENSRVLRVVLLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRSNGQGSALDHFLGFSQPDSSVTPCVPAVSMNRDEQDVLLVHHPDMPENSRVLRVVLLG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 APNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQVILLDTPGIISPGKQKRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APNAGKSTLSNQLLGRKVFPVSRKVHTTRCQALGVITEKETQVILLDTPGIISPGKQKRH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 HLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRCLTKYSQIPSVLVMNKVDC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
NP_001 HLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRCLTKYSQIPSVLVMNK---
              190       200       210       220       230          

              250       260       270       280       290       300
pF1KE5 LKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPSPAVKDPNTQSVGNPQRIGWP
                                                                   
NP_001 ------------------------------------------------------------
                                                                   

              310       320       330       340       350       360
pF1KE5 HFKEIFMLSALSQEDVKTLKQYLLTQAQPGPWEYHSAVLTSQTPEEICANIIREKLLEHL
                           ::::::::::::::::::::::::::::::::::::::::
NP_001 --------------------QYLLTQAQPGPWEYHSAVLTSQTPEEICANIIREKLLEHL
                           240       250       260       270       

              370       380       390       400       410       420
pF1KE5 PQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIGPKGHVISQIAQEAGHDLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIGPKGHVISQIAQEAGHDLM
       280       290       300       310       320       330       

              430       
pF1KE5 DIFLCDVDIRLSVKLLK
       :::::::::::::::::
NP_001 DIFLCDVDIRLSVKLLK
       340       350    

>>NP_060796 (OMIM: 608087) GTPase IMAP family member 4 [  (329 aa)
 initn: 180 init1: 104 opt: 166  Z-score: 184.3  bits: 42.8 E(85289): 0.0016
Smith-Waterman score: 171; 28.3% identity (64.5% similar) in 166 aa overlap (82-241:9-159)

              60        70        80        90       100       110 
pF1KE5 FSGPRLASASRSNGQGSALDHFLGFSQPDSSVTPCVPAVSMNRDEQDVLLVHHPDMPENS
                                     : .: .:..:..  .:.         :.::
NP_060                       MAAQYGSMSFNPSTPGASYGPGRQE---------PRNS
                                     10        20                  

             120       130       140         150       160         
pF1KE5 RVLRVVLLGAPNAGKSTLSNQLLGRKVFP--VSRKVHTTRCQALGVITEKETQVILLDTP
       . ::.::.:  .::::. .:..::::::   .. :  : .:.  .  . :::.....:::
NP_060 Q-LRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSS-SWKETELVVVDTP
      30         40        50        60        70         80       

     170           180       190       200       210       220     
pF1KE5 GIIS---PGKQ-KRHHLELSLLEDPWKSMESADLVVVLVDVSDKWTRNQLSPQLLRCLTK
       ::..   :. . ... ..  :: .:  . ..  ::: :   ...  ... . ..:. . .
NP_060 GIFDTEVPNAETSKEIIRCILLTSP--GPHALLLVVPLGRYTEE--EHKATEKILKMFGE
        90       100       110         120         130       140   

         230       240       250       260       270       280     
pF1KE5 YSQIPSVLVMNKVDCLKQKSVLLELTAALTEGVVNGKKLKMRQAFHSHPGTHCPSPAVKD
        ..   .:.... : :                                            
NP_060 RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRA
           150       160       170       180       190       200   

>>XP_005250074 (OMIM: 608087) PREDICTED: GTPase IMAP fam  (343 aa)
 initn: 180 init1: 104 opt: 166  Z-score: 184.1  bits: 42.8 E(85289): 0.0016
Smith-Waterman score: 166; 30.0% identity (67.1% similar) in 140 aa overlap (108-241:40-173)

        80        90       100       110       120       130       
pF1KE5 QPDSSVTPCVPAVSMNRDEQDVLLVHHPDMPENSRVLRVVLLGAPNAGKSTLSNQLLGRK
                                     :.::. ::.::.:  .::::. .:..::::
XP_005 FNPSTPGASYGERAFSAPQTRLQGGPGRQEPRNSQ-LRIVLVGKTGAGKSATGNSILGRK
      10        20        30        40         50        60        

       140         150       160       170           180       190 
pF1KE5 VFP--VSRKVHTTRCQALGVITEKETQVILLDTPGIIS---PGKQ-KRHHLELSLLEDPW
       ::   .. :  : .:.  .  . :::.....:::::..   :. . ... ..  :: .: 
XP_005 VFHSGTAAKSITKKCEKRSS-SWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSP-
       70        80         90       100       110       120       

             200       210       220       230       240       250 
pF1KE5 KSMESADLVVVLVDVSDKWTRNQLSPQLLRCLTKYSQIPSVLVMNKVDCLKQKSVLLELT
        . ..  ::: :   ...  ... . ..:. . . ..   .:.... : :          
XP_005 -GPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLR
         130       140         150       160       170       180   

             260       270       280       290       300       310 
pF1KE5 AALTEGVVNGKKLKMRQAFHSHPGTHCPSPAVKDPNTQSVGNPQRIGWPHFKEIFMLSAL
                                                                   
XP_005 EAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRA
           190       200       210       220       230       240   

>>NP_598399 (OMIM: 608536,616198) tRNA modification GTPa  (524 aa)
 initn: 189 init1:  96 opt: 164  Z-score: 179.4  bits: 42.6 E(85289): 0.003
Smith-Waterman score: 164; 26.7% identity (54.7% similar) in 236 aa overlap (67-286:229-459)

         40        50        60        70        80          90    
pF1KE5 LGFQRRCVSCVAGSAFSGPRLASASRSNGQGSALDHFLGFSQPDSSVTPCV--PAVSMN-
                                     :    :.     :. :.. :.  :..... 
NP_598 LAHVEAYIDFGEDDNLEEGVLEQGGSTWWWGRKTPHISPQRLPSLSLSACLLSPTADIEV
      200       210       220       230       240       250        

           100       110          120       130        140         
pF1KE5 RDEQDVLLVHHPDMPENSRV---LRVVLLGAPNAGKSTLSNQLLGRK-VFPVSRKVHTTR
       :  : .: .:  :  ...:.   ..::. : ::::::.: : ::.:: :  :: .  :::
NP_598 RALQVALGAHLRDARRGQRLRSGVHVVVTGPPNAGKSSLVN-LLSRKPVSIVSPEPGTTR
      260       270       280       290        300       310       

     150       160       170       180       190       200         
pF1KE5 CQALGVITEKETQVILLDTPGIISPGKQKRHHLELSLLEDPWKSMESADLVVVLVDVSDK
             .      :.: :: :.    ..    .:   ..   . .:.:::.....:.:: 
NP_598 DVLETPVDLAGFPVLLSDTAGL----REGVGPVEQEGVRRARERLEQADLILAMLDASDL
       320       330           340       350       360       370   

     210       220       230             240         250       260 
pF1KE5 WTRNQLSPQLLRCLTKYSQIPS------VLVMNKVDCLKQKSVLL--ELTAALTEGVVNG
        . .. .       .  .: ::      .::.:: : :. ..     .:   :  . ..:
NP_598 ASPSSCNFLATVVASVGAQSPSDSSQRLLLVLNKSDLLSPEGPGPGPDLPPHLLLSCLTG
           380       390       400       410       420       430   

              270       280       290       300       310       320
pF1KE5 KKLK-MRQAFHSHPGTHCPSPAVKDPNTQSVGNPQRIGWPHFKEIFMLSALSQEDVKTLK
       . :  . .:.... .. : .:..  :                                  
NP_598 EGLDGLLEALRKELAAVCGDPSTDPPLLTRARHQHHLQGCLDALGHYKQSKDLALAAEAL
           440       450       460       470       480       490   




437 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:20:04 2016 done: Tue Nov  8 01:20:05 2016
 Total Scan time:  8.530 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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