FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6118, 80 aa
  1>>>pF1KE6118 80 - 80 aa - 80 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7340+/-0.000582; mu= 9.8783+/- 0.035
 mean_var=42.4009+/- 8.235, 0's: 0 Z-trim(109.3): 5  B-trim: 0 in 0/49
 Lambda= 0.196964
 statistics sampled from 10755 (10760) to 10755 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.331), width:  16
 Scan time:  0.850

The best scores are:                                      opt bits E(32554)
CCDS14437.1 COX7B gene_id:1349|Hs108|chrX          (  80)  545 161.2   6e-41
CCDS3472.2 COX7B2 gene_id:170712|Hs108|chr4        (  81)  428 128.0 6.2e-31


>>CCDS14437.1 COX7B gene_id:1349|Hs108|chrX               (80 aa)
 initn: 545 init1: 545 opt: 545  Z-score: 848.6  bits: 161.2 E(32554): 6e-41
Smith-Waterman score: 545; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:1-80)

               10        20        30        40        50        60
pF1KE6 MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV
               10        20        30        40        50        60

               70        80
pF1KE6 GIEWNLSPVGRVTPKEWRNQ
       ::::::::::::::::::::
CCDS14 GIEWNLSPVGRVTPKEWRNQ
               70        80

>>CCDS3472.2 COX7B2 gene_id:170712|Hs108|chr4             (81 aa)
 initn: 435 init1: 428 opt: 428  Z-score: 668.8  bits: 128.0 E(32554): 6.2e-31
Smith-Waterman score: 428; 70.0% identity (96.2% similar) in 80 aa overlap (1-80:2-81)

                10        20        30        40        50         
pF1KE6  MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQ
        ::::...::. :...:: :.:::.:: :..:::::::::::::::..::..::...:::
CCDS34 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
               10        20        30        40        50        60

      60        70        80
pF1KE6 VGIEWNLSPVGRVTPKEWRNQ
       .:::::::::::::::::..:
CCDS34 IGIEWNLSPVGRVTPKEWKHQ
               70        80 




80 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:36:22 2016 done: Tue Nov  8 09:36:22 2016
 Total Scan time:  0.850 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]