FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6146, 98 aa 1>>>pF1KE6146 98 - 98 aa - 98 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8292+/-0.000295; mu= 11.3969+/- 0.018 mean_var=52.2952+/-10.709, 0's: 0 Z-trim(117.2): 10 B-trim: 31 in 2/53 Lambda= 0.177355 statistics sampled from 29001 (29011) to 29001 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.739), E-opt: 0.2 (0.34), width: 16 Scan time: 2.510 The best scores are: opt bits E(85289) XP_011509532 (OMIM: 252010,603839) PREDICTED: NADH ( 98) 701 186.4 6.3e-48 NP_002482 (OMIM: 252010,603839) NADH dehydrogenase ( 98) 701 186.4 6.3e-48 NP_001244031 (OMIM: 252010,603839) NADH dehydrogen ( 98) 701 186.4 6.3e-48 XP_016859675 (OMIM: 252010,603839) PREDICTED: NADH ( 98) 701 186.4 6.3e-48 >>XP_011509532 (OMIM: 252010,603839) PREDICTED: NADH deh (98 aa) initn: 701 init1: 701 opt: 701 Z-score: 981.4 bits: 186.4 E(85289): 6.3e-48 Smith-Waterman score: 701; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98) 10 20 30 40 50 60 pF1KE6 MAHEHGHEHGHHKMELPDYRQWKIEGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MAHEHGHEHGHHKMELPDYRQWKIEGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS 10 20 30 40 50 60 70 80 90 pF1KE6 VSFSDVFFKGFKWGFAAFVVAVGAEYYLESLNKDKKHH :::::::::::::::::::::::::::::::::::::: XP_011 VSFSDVFFKGFKWGFAAFVVAVGAEYYLESLNKDKKHH 70 80 90 >>NP_002482 (OMIM: 252010,603839) NADH dehydrogenase [ub (98 aa) initn: 701 init1: 701 opt: 701 Z-score: 981.4 bits: 186.4 E(85289): 6.3e-48 Smith-Waterman score: 701; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98) 10 20 30 40 50 60 pF1KE6 MAHEHGHEHGHHKMELPDYRQWKIEGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MAHEHGHEHGHHKMELPDYRQWKIEGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS 10 20 30 40 50 60 70 80 90 pF1KE6 VSFSDVFFKGFKWGFAAFVVAVGAEYYLESLNKDKKHH :::::::::::::::::::::::::::::::::::::: NP_002 VSFSDVFFKGFKWGFAAFVVAVGAEYYLESLNKDKKHH 70 80 90 >>NP_001244031 (OMIM: 252010,603839) NADH dehydrogenase (98 aa) initn: 701 init1: 701 opt: 701 Z-score: 981.4 bits: 186.4 E(85289): 6.3e-48 Smith-Waterman score: 701; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98) 10 20 30 40 50 60 pF1KE6 MAHEHGHEHGHHKMELPDYRQWKIEGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAHEHGHEHGHHKMELPDYRQWKIEGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS 10 20 30 40 50 60 70 80 90 pF1KE6 VSFSDVFFKGFKWGFAAFVVAVGAEYYLESLNKDKKHH :::::::::::::::::::::::::::::::::::::: NP_001 VSFSDVFFKGFKWGFAAFVVAVGAEYYLESLNKDKKHH 70 80 90 >>XP_016859675 (OMIM: 252010,603839) PREDICTED: NADH deh (98 aa) initn: 701 init1: 701 opt: 701 Z-score: 981.4 bits: 186.4 E(85289): 6.3e-48 Smith-Waterman score: 701; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98) 10 20 30 40 50 60 pF1KE6 MAHEHGHEHGHHKMELPDYRQWKIEGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MAHEHGHEHGHHKMELPDYRQWKIEGTPLETIQKKLAAKGLRDPWGRNEAWRYMGGFAKS 10 20 30 40 50 60 70 80 90 pF1KE6 VSFSDVFFKGFKWGFAAFVVAVGAEYYLESLNKDKKHH :::::::::::::::::::::::::::::::::::::: XP_016 VSFSDVFFKGFKWGFAAFVVAVGAEYYLESLNKDKKHH 70 80 90 98 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:51:26 2016 done: Tue Nov 8 09:51:26 2016 Total Scan time: 2.510 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]