FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5217, 204 aa 1>>>pF1KE5217 204 - 204 aa - 204 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5692+/-0.00088; mu= 10.7950+/- 0.053 mean_var=51.7861+/-10.543, 0's: 0 Z-trim(104.0): 17 B-trim: 0 in 0/46 Lambda= 0.178225 statistics sampled from 7681 (7683) to 7681 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.236), width: 16 Scan time: 1.780 The best scores are: opt bits E(32554) CCDS12978.1 RPS5 gene_id:6193|Hs108|chr19 ( 204) 1322 347.8 2.7e-96 >>CCDS12978.1 RPS5 gene_id:6193|Hs108|chr19 (204 aa) initn: 1322 init1: 1322 opt: 1322 Z-score: 1842.2 bits: 347.8 E(32554): 2.7e-96 Smith-Waterman score: 1322; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204) 10 20 30 40 50 60 pF1KE5 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MTEWETAAPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 PREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 130 140 150 160 170 180 190 200 pF1KE5 AKGSSNSYAIKKKDELERVAKSNR :::::::::::::::::::::::: CCDS12 AKGSSNSYAIKKKDELERVAKSNR 190 200 204 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:36:06 2016 done: Mon Nov 7 22:36:06 2016 Total Scan time: 1.780 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]