(Circular) (Six-base) MAPSORT of: pFN21AE3944.seq Check: 51 from: 1 to: 5482 pFN21AE3944 5482 bp With 182 enzymes: SgfI * March 28, 2012 11:49 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3292 278 Size: 53 83 186 936 1756 2468 Fragments arranged by size: 2468 1756 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2825 1937 Size: 888 4594 Acc65I G'GTAC_C Cuts at: 2803 2803 Size: 5482 AclI AA'CG_TT Cuts at: 1563 2118 3609 3982 1563 Size: 555 1491 373 3063 Fragments arranged by size: 3063 1491 555 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2245 3545 4929 5197 1632 Size: 613 1300 1384 268 1917 Fragments arranged by size: 1917 1384 1300 613 268 AflII C'TTAA_G Cuts at: 820 1017 2672 820 Size: 197 1655 3630 Fragments arranged by size: 3630 1655 197 AflIII A'CryG_T Cuts at: 1203 4381 5358 1203 Size: 3178 977 1327 Fragments arranged by size: 3178 1327 977 AgeI A'CCGG_T Cuts at: 4313 4313 Size: 5482 AhdI GACnn_n'nnGTC Cuts at: 4211 4211 Size: 5482 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5482 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5482 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2081 2113 2081 Size: 32 5450 AlwNI CAG_nnn'CTG Cuts at: 3225 4797 3225 Size: 1572 3910 ApaLI G'TGCA_C Cuts at: 3539 4695 3539 Size: 1156 4326 ApoI r'AATT_y Cuts at: 1493 2348 2791 3017 3169 5278 1493 Size: 855 443 226 152 2109 1697 Fragments arranged by size: 2109 1697 855 443 226 152 AseI AT'TA_AT Cuts at: 160 1032 4036 160 Size: 872 3004 1606 Fragments arranged by size: 3004 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5482 AvaI C'yCGr_G Cuts at: 1870 1943 2807 1870 Size: 73 864 4545 Fragments arranged by size: 4545 864 73 BamHI G'GATC_C Cuts at: 2812 3179 2812 Size: 367 5115 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2803 4258 618 Size: 325 217 627 1016 1455 1842 Fragments arranged by size: 1842 1455 1016 627 325 217 BanII G_rGCy'C Cuts at: 1391 2801 1391 Size: 1410 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2646 928 Size: 971 747 3764 Fragments arranged by size: 3764 971 747 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3673 3707 1903 Size: 34 1736 34 3678 Fragments arranged by size: 3678 1736 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3374 4584 3374 Size: 1210 4272 BclI T'GATC_A Cuts at: 1548 2077 1548 Size: 529 4953 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4093 136 Size: 107 122 71 631 605 2421 1525 Fragments arranged by size: 2421 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5477 5477 Size: 5482 BlpI GC'TnA_GC Cuts at: 2899 2899 Size: 5482 Bme1580I G_kGCm'C Cuts at: 1790 3543 4699 1790 Size: 1753 1156 2573 Fragments arranged by size: 2573 1753 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5482 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3213 4171 442 Size: 416 53 83 399 24 1796 958 1753 Fragments arranged by size: 1796 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5482 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4142 1239 Size: 2903 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2345 3607 4472 4770 2345 Size: 1262 865 298 3057 Fragments arranged by size: 3057 1262 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2258 4145 882 Size: 617 759 1887 2219 Fragments arranged by size: 2219 1887 759 617 BsaAI yAC'GTr Cuts at: 493 1204 3273 493 Size: 711 2069 2702 Fragments arranged by size: 2702 2069 711 BsaBI GATnn'nnATC Cuts at: 2076 5476 2076 Size: 3400 2082 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3289 3671 4306 275 Size: 53 83 186 936 1756 382 635 1451 Fragments arranged by size: 1756 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3915 4313 4587 4734 5145 3915 Size: 398 274 147 411 4252 Fragments arranged by size: 4252 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5257 Fragments arranged by size: 5257 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2246 2573 1186 Size: 1060 327 4095 Fragments arranged by size: 4095 1060 327 BseYI C'CCAG_C Cuts at: 4685 5181 4685 Size: 496 4986 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4909 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2455 2932 3693 4721 1540 Size: 275 186 454 477 761 1028 2301 Fragments arranged by size: 2301 1028 761 477 454 275 186 BsiHKAI G_wGCw'C Cuts at: 3543 3628 4699 3543 Size: 85 1071 4326 Fragments arranged by size: 4326 1071 85 BsmI GAATG_Cn' Cuts at: 2993 3086 2993 Size: 93 5389 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2801 3543 3628 4699 1391 Size: 399 1011 742 85 1071 2174 Fragments arranged by size: 2174 1071 1011 742 399 85 BspEI T'CCGG_A Cuts at: 5145 5145 Size: 5482 BspHI T'CATG_A Cuts at: 2688 3371 5101 2688 Size: 683 1730 3069 Fragments arranged by size: 3069 1730 683 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2837 844 Size: 1993 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3369 1394 Size: 429 1546 3507 Fragments arranged by size: 3507 1546 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3977 4151 65 Size: 1183 2729 174 1396 Fragments arranged by size: 2729 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4126 4313 1700 Size: 110 2316 187 2869 Fragments arranged by size: 2869 2316 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5482 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5482 BssSI C'ACGA_G Cuts at: 3542 4554 3542 Size: 1012 4470 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5482 BstBI TT'CG_AA Cuts at: 4286 4286 Size: 5482 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5482 BstYI r'GATC_y Cuts at: 1972 2812 3179 3564 3581 5033 5119 5131 5477 Size: 840 367 385 17 1452 86 12 346 Cuts at: 5477 1972 Size: 1977 Fragments arranged by size: 1977 1452 840 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 3991 Fragments arranged by size: 3991 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2775 487 Size: 683 56 1549 3194 Fragments arranged by size: 3194 1549 683 56 BtsI GCAGTG_nn' Cuts at: 2998 3792 3812 2998 Size: 794 20 4668 Fragments arranged by size: 4668 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5482 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 2104 2139 529 Size: 35 1540 35 3872 Fragments arranged by size: 3872 1540 35 35 DraI TTT'AAA Cuts at: 2593 2700 2786 2593 Size: 107 86 5289 Fragments arranged by size: 5289 107 86 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4489 809 Size: 507 3173 1802 Fragments arranged by size: 3173 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2929 3818 5447 Size: 54 1425 50 275 18 1099 889 1629 Cuts at: 5447 8 Size: 43 Fragments arranged by size: 1629 1425 1099 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2929 1537 Size: 275 1117 4090 Fragments arranged by size: 4090 1117 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2020 2264 3412 1353 Size: 667 244 1148 3423 Fragments arranged by size: 3423 1148 667 244 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4069 4443 4589 387 Size: 1064 138 2480 374 146 1280 Fragments arranged by size: 2480 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2245 3545 4142 4929 5197 1239 Size: 393 613 1300 597 787 268 1524 Fragments arranged by size: 1524 1300 787 613 597 393 268 EcoRI G'AATT_C Cuts at: 2348 2791 3169 2348 Size: 443 378 4661 Fragments arranged by size: 4661 443 378 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2725 2725 Size: 5482 FspI TGC'GCA Cuts at: 3988 3988 Size: 5482 HaeII r_GCGC'y Cuts at: 1678 4629 1678 Size: 2951 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2457 2483 2489 2515 4123 Size: 32 135 32 885 26 6 26 1608 Cuts at: 4123 4155 4197 4229 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1608 885 135 42 32 32 32 32 26 26 6 HincII GTy'rAC Cuts at: 669 1657 1938 2826 3072 669 Size: 988 281 888 246 3079 Fragments arranged by size: 3079 988 888 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5482 HpaI GTT'AAC Cuts at: 3072 3072 Size: 5482 KpnI G_GTAC'C Cuts at: 2807 2807 Size: 5482 MfeI C'AATT_G Cuts at: 2748 3081 2748 Size: 333 5149 MluI A'CGCG_T Cuts at: 5358 5358 Size: 5482 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4596 4780 1305 Size: 3291 184 2007 Fragments arranged by size: 3291 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3660 Fragments arranged by size: 3660 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2105 2760 3440 3799 3958 518 Size: 648 939 655 680 359 159 2042 Fragments arranged by size: 2042 939 680 655 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2898 3575 4723 4968 1606 Size: 1292 677 1148 245 2120 Fragments arranged by size: 2120 1292 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3991 Fragments arranged by size: 3991 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5482 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5482 NotI GC'GGCC_GC Cuts at: 2929 2929 Size: 5482 NspI r_CATG'y Cuts at: 1132 1229 2270 2840 4385 1132 Size: 97 1041 570 1545 2229 Fragments arranged by size: 2229 1545 1041 570 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5482 PciI A'CATG_T Cuts at: 4381 4381 Size: 5482 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5482 PmeI GTTT'AAAC Cuts at: 2786 2786 Size: 5482 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3551 3583 5064 5096 3551 Size: 32 1481 32 3937 Fragments arranged by size: 3937 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5482 PsiI TTA'TAA Cuts at: 3052 3052 Size: 5482 PstI C_TGCA'G Cuts at: 830 2834 830 Size: 2004 3478 PvuI CG_AT'CG Cuts at: 2001 2455 2001 Size: 454 5028 SalI G'TCGA_C Cuts at: 1936 2824 1936 Size: 888 4594 SbfI CC_TGCA'GG Cuts at: 2834 2834 Size: 5482 ScaI AGT'ACT Cuts at: 3730 5442 3730 Size: 1712 3770 SfcI C'TryA_G Cuts at: 826 1045 2830 3965 4646 4837 826 Size: 219 1785 1135 681 191 1471 Fragments arranged by size: 1785 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5482 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5482 SmaI CCC'GGG Cuts at: 1872 2809 1872 Size: 937 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2360 2672 3586 4487 4749 820 Size: 197 926 417 312 914 901 262 1553 Fragments arranged by size: 1553 926 914 901 417 312 262 197 SnaBI TAC'GTA Cuts at: 493 3273 493 Size: 2780 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5482 SphI G_CATG'C Cuts at: 1132 2840 1132 Size: 1708 3774 SspI AAT'ATT Cuts at: 5 52 3406 5 Size: 47 3354 2081 Fragments arranged by size: 3354 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5482 StyI C'CwwG_G Cuts at: 513 1065 2004 2661 2921 513 Size: 552 939 657 260 3074 Fragments arranged by size: 3074 939 657 552 260 SwaI ATTT'AAAT Cuts at: 2593 2593 Size: 5482 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2428 3509 3526 3679 3864 4309 325 Size: 1255 848 1081 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1081 848 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2629 3728 5440 Size: 274 80 33 51 1443 652 1099 1712 Cuts at: 5440 96 Size: 138 Fragments arranged by size: 1712 1443 1099 652 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5442 5474 5442 Size: 32 5450 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5482 XbaI T'CTAG_A Cuts at: 2818 2818 Size: 5482 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2539 2539 Size: 5482 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5482 XmaI C'CCGG_G Cuts at: 1870 2807 1870 Size: 937 4545 XmnI GAAnn'nnTTC Cuts at: 2313 2352 3611 2313 Size: 39 1259 4184 Fragments arranged by size: 4184 1259 39 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3290 276 Size: 53 83 186 936 1756 2468 Fragments arranged by size: 2468 1756 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI SwaI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI