FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3944, 259 aa 1>>>pF1KE3944 259 - 259 aa - 259 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7061+/-0.000973; mu= 12.2193+/- 0.058 mean_var=65.6774+/-12.934, 0's: 0 Z-trim(104.7): 53 B-trim: 7 in 1/48 Lambda= 0.158258 statistics sampled from 7995 (8047) to 7995 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.247), width: 16 Scan time: 2.140 The best scores are: opt bits E(32554) CCDS9396.1 KCTD4 gene_id:386618|Hs108|chr13 ( 259) 1700 397.0 6.8e-111 CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 ( 237) 322 82.4 3.2e-16 CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 ( 260) 312 80.1 1.7e-15 CCDS12434.1 KCTD15 gene_id:79047|Hs108|chr19 ( 234) 302 77.8 7.5e-15 CCDS46039.1 KCTD15 gene_id:79047|Hs108|chr19 ( 283) 302 77.8 9e-15 CCDS11888.1 KCTD1 gene_id:284252|Hs108|chr18 ( 257) 288 74.6 7.5e-14 CCDS9128.1 KCTD10 gene_id:83892|Hs108|chr12 ( 313) 246 65.0 6.9e-11 >>CCDS9396.1 KCTD4 gene_id:386618|Hs108|chr13 (259 aa) initn: 1700 init1: 1700 opt: 1700 Z-score: 2104.4 bits: 397.0 E(32554): 6.8e-111 Smith-Waterman score: 1700; 99.6% identity (100.0% similar) in 259 aa overlap (1-259:1-259) 10 20 30 40 50 60 pF1KE3 MERKINRREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 MERKINRREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 GIVNGKILCPFDADGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 GIVNGKILCPFDADGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GLAEEVKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS93 GLAEEVKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 DGFPEEFSISSNIIRFKYFIKSENGTRLVLKEDNTFVCTLETLKFEAIMMALKCGFRLLT ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: CCDS93 DGFPEEFSISSNIIQFKYFIKSENGTRLVLKEDNTFVCTLETLKFEAIMMALKCGFRLLT 190 200 210 220 230 240 250 pF1KE3 SLDCSKGSIVHSDALHFIK ::::::::::::::::::: CCDS93 SLDCSKGSIVHSDALHFIK 250 >>CCDS2891.1 KCTD6 gene_id:200845|Hs108|chr3 (237 aa) initn: 306 init1: 306 opt: 322 Z-score: 404.6 bits: 82.4 E(32554): 3.2e-16 Smith-Waterman score: 322; 39.7% identity (70.5% similar) in 156 aa overlap (35-188:14-161) 10 20 30 40 50 60 pF1KE3 INRREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLEGIVN .::::::.:: :. :::.:::..: .. . CCDS28 MDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMFG 10 20 30 40 70 80 90 100 110 120 pF1KE3 GKILCPFDADGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLKGLAE : . : .:.::::::: :::.::::::..:: :: :.: .:: .::.:.:.. : . CCDS28 GDFPTARDPQGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLIQ 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE3 EVKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSK--SRLDG .. . . : : .: : :... . .. : . : : .. : .......: : :.: CCDS28 CLN---DPKPLYPMDT-FEEVVE-LSSTRKLSKYSN-P--VAVIITQLTITTKVHSLLEG 110 120 130 140 150 190 200 210 220 230 240 pF1KE3 FPEEFSISSNIIRFKYFIKSENGTRLVLKEDNTFVCTLETLKFEAIMMALKCGFRLLTSL . . :. CCDS28 ISNYFTKWNKHMMDTRDCQVSFTFGPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSE 160 170 180 190 200 210 >>CCDS31645.1 KCTD21 gene_id:283219|Hs108|chr11 (260 aa) initn: 343 init1: 299 opt: 312 Z-score: 391.7 bits: 80.1 E(32554): 1.7e-15 Smith-Waterman score: 312; 42.9% identity (73.7% similar) in 133 aa overlap (35-166:5-135) 10 20 30 40 50 60 pF1KE3 INRREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLEGIVN .:::::: :: :. :::..::..: .. . CCDS31 MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFS 10 20 30 70 80 90 100 110 120 pF1KE3 GKILCPFDADGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLKGLAE ::. :..:. :::::: .::..:::::...: ::: :.: :: .::.:.:.. : : CCDS31 GKMPTKRDSQGNCFIDRDGKVFRYILNFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIE 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 EVKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFC-NAPDFISKIKSRIVLVSKSRLDGF .. . : : .....:.:: :. : : ... .::.. : CCDS31 ALQEK-EVELSKAEKNAMLNITLNQ-RVQTVHFTVREAPQIYSLSSSSMEVFNANIFSTS 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE3 PEEFSISSNIIRFKYFIKSENGTRLVLKEDNTFVCTLETLKFEAIMMALKCGFRLLTSLD CCDS31 CLFLKLLGSKLFYCSNGNLSSITSHLQDPNHLTLDWVANVEGLPEEEYTKQNLKRLWVVP 160 170 180 190 200 210 >>CCDS12434.1 KCTD15 gene_id:79047|Hs108|chr19 (234 aa) initn: 281 init1: 200 opt: 302 Z-score: 380.1 bits: 77.8 E(32554): 7.5e-15 Smith-Waterman score: 302; 43.8% identity (77.1% similar) in 105 aa overlap (37-140:60-163) 10 20 30 40 50 60 pF1KE3 RREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLEGIVNGK ..:::..: .. :::::::. . . :: CCDS12 LSLTRSPVSPLAAQGIPLPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPDSRISRLFNGT 30 40 50 60 70 80 70 80 90 100 110 120 pF1KE3 ILCPFDA-DGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLKGLAEE .:. :::::::: .::.::.:::...::::. :.. .:: .::...::. ...: CCDS12 EPIVLDSLKQHYFIDRDGEIFRYVLSFLRTSKLLLPDDFKDFSLLYEEARYYQLQPMVRE 90 100 110 120 130 140 130 140 150 160 170 180 pF1KE3 VKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSRLDGFPE .. ::..:: :.. CCDS12 LE-RWQQEQEQRRRSRACDCLVVRVTPDLGERIALSGEKALIEEVFPETGDVMCNSVNAG 150 160 170 180 190 200 >>CCDS46039.1 KCTD15 gene_id:79047|Hs108|chr19 (283 aa) initn: 299 init1: 200 opt: 302 Z-score: 378.7 bits: 77.8 E(32554): 9e-15 Smith-Waterman score: 302; 43.8% identity (77.1% similar) in 105 aa overlap (37-140:60-163) 10 20 30 40 50 60 pF1KE3 RREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLEGIVNGK ..:::..: .. :::::::. . . :: CCDS46 LSLTRSPVSPLAAQGIPLPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPDSRISRLFNGT 30 40 50 60 70 80 70 80 90 100 110 120 pF1KE3 ILCPFDA-DGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLKGLAEE .:. :::::::: .::.::.:::...::::. :.. .:: .::...::. ...: CCDS46 EPIVLDSLKQHYFIDRDGEIFRYVLSFLRTSKLLLPDDFKDFSLLYEEARYYQLQPMVRE 90 100 110 120 130 140 130 140 150 160 170 180 pF1KE3 VKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSRLDGFPE .. ::..:: :.. CCDS46 LE-RWQQEQEQRRRSRACDCLVVRVTPDLGERIALSGEKALIEEVFPETGDVMCNSVNAG 150 160 170 180 190 200 >>CCDS11888.1 KCTD1 gene_id:284252|Hs108|chr18 (257 aa) initn: 306 init1: 202 opt: 288 Z-score: 362.1 bits: 74.6 E(32554): 7.5e-14 Smith-Waterman score: 288; 41.7% identity (74.8% similar) in 103 aa overlap (37-138:34-135) 10 20 30 40 50 60 pF1KE3 RREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLEGIVNGK ..:::..: .. ::::::.. . . .: CCDS11 PLITRSPASPLNNQGIPTPAQLTKSNAPVHIDVGGHMYTSSLATLTKYPESRIGRLFDGT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ILCPFDA-DGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLKGLAEE .:. :::::::: .::..:::::...::.:. :.. :: .::..:::. . : CCDS11 EPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPMLLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VKSRWEKEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSRLDGFPE .. ::.... : : CCDS11 ME-RWKQDRETGRFSRPCECLVVRVAPDLGERITLSGDKSLIEEVFPEIGDVMCNSVNAG 130 140 150 160 170 180 >>CCDS9128.1 KCTD10 gene_id:83892|Hs108|chr12 (313 aa) initn: 244 init1: 176 opt: 246 Z-score: 308.9 bits: 65.0 E(32554): 6.9e-11 Smith-Waterman score: 246; 39.8% identity (66.4% similar) in 113 aa overlap (26-137:25-136) 10 20 30 40 50 60 pF1KE3 MERKINRREKEKEYEGKHNSLEDTDQGKNCKSTLMTLNVGGYLYITQKQTLTKYPDTFLE .: . .: . ::::: :: : ::::: ::.:. CCDS91 MEEMSGESVVSSAVPAAATRTTSFKGTSPSSKYVKLNVGGALYYTTMQTLTKQ-DTMLK 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 GIVNGKILCPFDADGHYFIDRDGLLFRHVLNFLRNGELLLPEGFRENQLLAQEAEFFQLK .. .:.. :..: .::: : : .::.::.: . :::. :: . : ::... .. CCDS91 AMFSGRMEVLTDSEGWILIDRCGKHFGTILNYLRDGAVPLPESRREIEELLAEAKYYLVQ 60 70 80 90 100 110 130 140 150 160 170 pF1KE3 GLAEEVKSRWE-KEQLTPRETTFLEITDNHDRSQGLRIFCNAPDFISKIKSRIVLVSKSR ::.:: .. . :. : CCDS91 GLVEECQAALQNKDTYEPFCKVPVITSSKEEQKLIATSNKPAVKLLYNRSNNKYSYTSNS 120 130 140 150 160 170 259 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:43:13 2016 done: Sun Nov 6 08:43:13 2016 Total Scan time: 2.140 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]