FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1476, 655 aa 1>>>pF1KE1476 655 - 655 aa - 655 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.1774+/-0.000919; mu= 12.1733+/- 0.056 mean_var=141.5507+/-28.223, 0's: 0 Z-trim(110.7): 32 B-trim: 59 in 2/48 Lambda= 0.107800 statistics sampled from 11793 (11822) to 11793 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.363), width: 16 Scan time: 4.150 The best scores are: opt bits E(32554) CCDS4921.1 TNFRSF21 gene_id:27242|Hs108|chr6 ( 655) 4427 700.4 2.1e-201 CCDS6326.1 TNFRSF11B gene_id:4982|Hs108|chr8 ( 401) 417 76.6 7.6e-14 CCDS13532.1 TNFRSF6B gene_id:8771|Hs108|chr20 ( 300) 412 75.7 1e-13 CCDS145.1 TNFRSF1B gene_id:7133|Hs108|chr1 ( 461) 414 76.1 1.2e-13 >>CCDS4921.1 TNFRSF21 gene_id:27242|Hs108|chr6 (655 aa) initn: 4427 init1: 4427 opt: 4427 Z-score: 3729.5 bits: 700.4 E(32554): 2.1e-201 Smith-Waterman score: 4427; 100.0% identity (100.0% similar) in 655 aa overlap (1-655:1-655) 10 20 30 40 50 60 pF1KE1 MGTSPSSSTALASCSRIARRATATMIAGSLLLLGFLSTTTAQPEQKASNLIGTYRHVDRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 MGTSPSSSTALASCSRIARRATATMIAGSLLLLGFLSTTTAQPEQKASNLIGTYRHVDRA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 TGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LPCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 LPCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 SSVMKCKAYTDCLSQNLVVIKPGTKETDNVCGTLPSFSSSTSPSPGTAIFPRPEHMETHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 SSVMKCKAYTDCLSQNLVVIKPGTKETDNVCGTLPSFSSSTSPSPGTAIFPRPEHMETHE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 VPSSTYVPKGMNSTESNSSASVRPKVLSSIQEGTVPDNTSSARGKEDVNKTLPNLQVVNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 VPSSTYVPKGMNSTESNSSASVRPKVLSSIQEGTVPDNTSSARGKEDVNKTLPNLQVVNH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 QQGPHHRHILKLLPSMEATGGEKSSTPIKGPKRGHPRQNLHKHFDINEHLPWMIVLFLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 QQGPHHRHILKLLPSMEATGGEKSSTPIKGPKRGHPRQNLHKHFDINEHLPWMIVLFLLL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 VLVVIVVCSIRKSSRTLKKGPRQDPSAIVEKAGLKKSMTPTQNREKWIYYCNGHGIDILK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 VLVVIVVCSIRKSSRTLKKGPRQDPSAIVEKAGLKKSMTPTQNREKWIYYCNGHGIDILK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 LVAAQVGSQWKDIYQFLCNASEREVAAFSNGYTADHERAYAALQHWTIRGPEASLAQLIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 LVAAQVGSQWKDIYQFLCNASEREVAAFSNGYTADHERAYAALQHWTIRGPEASLAQLIS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 ALRQHRRNDVVEKIRGLMEDTTQLETDKLALPMSPSPLSPSPIPSPNAKLENSALLTVEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 ALRQHRRNDVVEKIRGLMEDTTQLETDKLALPMSPSPLSPSPIPSPNAKLENSALLTVEP 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE1 SPQDKNKGFFVDESEPLLRCDSTSSGSSALSRNGSFITKEKKDTVLRQVRLDPCDLQPIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 SPQDKNKGFFVDESEPLLRCDSTSSGSSALSRNGSFITKEKKDTVLRQVRLDPCDLQPIF 550 560 570 580 590 600 610 620 630 640 650 pF1KE1 DDMLHFLNPEELRVIEEIPQAEDKLDRLFEIIGVKSQEASQTLLDSVYSHLPDLL ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS49 DDMLHFLNPEELRVIEEIPQAEDKLDRLFEIIGVKSQEASQTLLDSVYSHLPDLL 610 620 630 640 650 >>CCDS6326.1 TNFRSF11B gene_id:4982|Hs108|chr8 (401 aa) initn: 475 init1: 378 opt: 417 Z-score: 362.0 bits: 76.6 E(32554): 7.6e-14 Smith-Waterman score: 417; 28.5% identity (50.0% similar) in 288 aa overlap (54-334:28-308) 30 40 50 60 70 80 pF1KE1 TMIAGSLLLLGFLSTTTAQPEQKASNLIGTYRHVDRATGQVLTCDKCPAGTYVSEHCTNT : : :. :.. : ::::: :::...::: CCDS63 MNNLLCCALVFLDISIKWTTQETFPPKYLHYDEETSHQLLCDKCPPGTYLKQHCTAK 10 20 30 40 50 90 100 110 120 130 140 pF1KE1 SLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTDRECTCPPGMFQSNAT ::. :: .: . ..: :: : . : : .: : : : . CCDS63 WKTVCAPCPDHYYTDSWHTSDECLYCSPVCKELQYVKQECNRTHNRVCECKEGRYLEIEF 60 70 80 90 100 110 150 160 170 180 190 200 pF1KE1 CAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKAYTDCLSQNLVVIKPG : : :: :.:: . :: ... ::.: : ::. :: :. .:.: .:.. . : CCDS63 CLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCRKHTNCSVFGLLLTQKG 120 130 140 150 160 170 210 220 230 240 250 pF1KE1 TKETDNVCGTLPSFSSSTSPSPGTAIFPRPEHMETHEVPSSTYVPKGMN-------STES . ::.: : .: .. . : . : . ::.. ..:. .. .:. CCDS63 NATHDNIC----SGNSESTQKCGIDVTLCEEAFFRFAVPTK-FTPNWLSVLVDNLPGTKV 180 190 200 210 220 230 260 270 280 290 300 310 pF1KE1 NSSASVRPKVLSSIQEGTVPDNTSSARGKEDVNKTLPNLQVVNHQQGPHHRHILKLLPSM :. . : : : :: : . ..: . . .: .. .. .::: . .. CCDS63 NAESVERIKRQHSSQEQTFQLLKLWKHQNKDQDIVKKIIQDIDLCENSVQRHIGHANLTF 240 250 260 270 280 290 320 330 340 350 360 370 pF1KE1 EATGGEKSSTPIKGPKRGHPRQNLHKHFDINEHLPWMIVLFLLLVLVVIVVCSIRKSSRT : . : : : : : CCDS63 EQLRSLMESLP--GKKVGAEDIEKTIKACKPSDQILKLLSLWRIKNGDQDTLKGLMHALK 300 310 320 330 340 350 >>CCDS13532.1 TNFRSF6B gene_id:8771|Hs108|chr20 (300 aa) initn: 408 init1: 408 opt: 412 Z-score: 359.5 bits: 75.7 E(32554): 1e-13 Smith-Waterman score: 412; 33.2% identity (54.3% similar) in 199 aa overlap (29-226:10-207) 10 20 30 40 50 pF1KE1 MGTSPSSSTALASCSRIARRATATMIAGSLLLLGF-LSTTTAQPEQKASNLIGTYRHVDR ::: : . : . : .. :: : CCDS13 MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDA 10 20 30 40 60 70 80 90 100 110 pF1KE1 ATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIE ::. :.: .:: ::.:.. : : .:. :: .:. : .:.:. :. : : CCDS13 ETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEE 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 KLPCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDV : : .: : : :.: . : :. :: : :: :: .....:. : :::: CCDS13 ARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSAS 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE1 PSSVMKCKAYTDCLSQNLVVIKPGTKETDNVCGTLPSFSSSTSPSPGTAIFPRPEHMETH :: .:. . .: . .:.. ::.. :..: . .: :: :: CCDS13 SSSSEQCQPHRNCTALGLALNVPGSSSHDTLCTSCTGFPLSTR-VPGAEECERAVIDFVA 170 180 190 200 210 220 240 250 260 270 280 290 pF1KE1 EVPSSTYVPKGMNSTESNSSASVRPKVLSSIQEGTVPDNTSSARGKEDVNKTLPNLQVVN CCDS13 FQDISIKRLQRLLQALEAPEGWGPTPRAGRAALQLKLRRRLTELLGAQDGALLVRLLQAL 230 240 250 260 270 280 >>CCDS145.1 TNFRSF1B gene_id:7133|Hs108|chr1 (461 aa) initn: 429 init1: 187 opt: 414 Z-score: 358.6 bits: 76.1 E(32554): 1.2e-13 Smith-Waterman score: 445; 30.2% identity (55.4% similar) in 305 aa overlap (65-337:52-349) 40 50 60 70 80 90 pF1KE1 FLSTTTAQPEQKASNLIGTYRHVDRATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVG . :.:: : ... ::.:: ::.:: . CCDS14 ALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDS 30 40 50 60 70 80 100 110 120 130 140 pF1KE1 TFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTDRECTCPPGMF------QSNATCAPHT :.:. : . .: .:.. : ..: :. .: ::: :: . .. ::: CCDS14 TYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLR 90 100 110 120 130 140 150 160 170 180 190 200 pF1KE1 VCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKAYTDCLSQNLVVIKPGTKETD : :.:: . :::: :: :: :: ::::.. ::. :. . : :.:.: ::. : CCDS14 KCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRPHQIC---NVVAI-PGNASMD 150 160 170 180 190 210 220 230 240 250 pF1KE1 NVCGTLPSFSSSTSPSPGTAIFPRP-----EHM----ETHEVPSSTYV-PKGMNSTESNS :: : : . : .::.. .:.: .: : .::.... : : . .: CCDS14 AVC---TSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTSFLLPMGPSPPAEGS 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 SAS--------VRPKVLSSIQEGTVPDNTSSARGKEDV----NKTLPNLQV--VNHQQGP ... : .:. . :.: . :. . . .:.: . . ::: CCDS14 TGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKVPHLPADKARGTQGP 260 270 280 290 300 310 310 320 330 340 350 360 pF1KE1 HHRHILKLLPSMEATGGEKSSTPI--KGPKRGHPRQNLHKHFDINEHLPWMIVLFLLLVL ...:.: :: ... :.:.. . ..: :..:. CCDS14 EQQHLLITAPSSSSSSLESSASALDRRAPTRNQPQAPGVEASGAGEARASTGSSDSSPGG 320 330 340 350 360 370 370 380 390 400 410 420 pF1KE1 VVIVVCSIRKSSRTLKKGPRQDPSAIVEKAGLKKSMTPTQNREKWIYYCNGHGIDILKLV CCDS14 HGTQVNVTCIVNVCSSSDHSSQCSSQASSTMGDTDSSPSESPKDEQVPFSKEECAFRSQL 380 390 400 410 420 430 655 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 00:59:47 2016 done: Mon Nov 7 00:59:47 2016 Total Scan time: 4.150 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]