Result of FASTA (ccds) for pFN21AE1476
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1476, 655 aa
  1>>>pF1KE1476 655 - 655 aa - 655 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1774+/-0.000919; mu= 12.1733+/- 0.056
 mean_var=141.5507+/-28.223, 0's: 0 Z-trim(110.7): 32  B-trim: 59 in 2/48
 Lambda= 0.107800
 statistics sampled from 11793 (11822) to 11793 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.363), width:  16
 Scan time:  4.150

The best scores are:                                      opt bits E(32554)
CCDS4921.1 TNFRSF21 gene_id:27242|Hs108|chr6       ( 655) 4427 700.4 2.1e-201
CCDS6326.1 TNFRSF11B gene_id:4982|Hs108|chr8       ( 401)  417 76.6 7.6e-14
CCDS13532.1 TNFRSF6B gene_id:8771|Hs108|chr20      ( 300)  412 75.7   1e-13
CCDS145.1 TNFRSF1B gene_id:7133|Hs108|chr1         ( 461)  414 76.1 1.2e-13


>>CCDS4921.1 TNFRSF21 gene_id:27242|Hs108|chr6            (655 aa)
 initn: 4427 init1: 4427 opt: 4427  Z-score: 3729.5  bits: 700.4 E(32554): 2.1e-201
Smith-Waterman score: 4427; 100.0% identity (100.0% similar) in 655 aa overlap (1-655:1-655)

               10        20        30        40        50        60
pF1KE1 MGTSPSSSTALASCSRIARRATATMIAGSLLLLGFLSTTTAQPEQKASNLIGTYRHVDRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 MGTSPSSSTALASCSRIARRATATMIAGSLLLLGFLSTTTAQPEQKASNLIGTYRHVDRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 TGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 TGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 LPCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 LPCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 SSVMKCKAYTDCLSQNLVVIKPGTKETDNVCGTLPSFSSSTSPSPGTAIFPRPEHMETHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 SSVMKCKAYTDCLSQNLVVIKPGTKETDNVCGTLPSFSSSTSPSPGTAIFPRPEHMETHE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 VPSSTYVPKGMNSTESNSSASVRPKVLSSIQEGTVPDNTSSARGKEDVNKTLPNLQVVNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 VPSSTYVPKGMNSTESNSSASVRPKVLSSIQEGTVPDNTSSARGKEDVNKTLPNLQVVNH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QQGPHHRHILKLLPSMEATGGEKSSTPIKGPKRGHPRQNLHKHFDINEHLPWMIVLFLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 QQGPHHRHILKLLPSMEATGGEKSSTPIKGPKRGHPRQNLHKHFDINEHLPWMIVLFLLL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 VLVVIVVCSIRKSSRTLKKGPRQDPSAIVEKAGLKKSMTPTQNREKWIYYCNGHGIDILK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 VLVVIVVCSIRKSSRTLKKGPRQDPSAIVEKAGLKKSMTPTQNREKWIYYCNGHGIDILK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 LVAAQVGSQWKDIYQFLCNASEREVAAFSNGYTADHERAYAALQHWTIRGPEASLAQLIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 LVAAQVGSQWKDIYQFLCNASEREVAAFSNGYTADHERAYAALQHWTIRGPEASLAQLIS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 ALRQHRRNDVVEKIRGLMEDTTQLETDKLALPMSPSPLSPSPIPSPNAKLENSALLTVEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 ALRQHRRNDVVEKIRGLMEDTTQLETDKLALPMSPSPLSPSPIPSPNAKLENSALLTVEP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 SPQDKNKGFFVDESEPLLRCDSTSSGSSALSRNGSFITKEKKDTVLRQVRLDPCDLQPIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 SPQDKNKGFFVDESEPLLRCDSTSSGSSALSRNGSFITKEKKDTVLRQVRLDPCDLQPIF
              550       560       570       580       590       600

              610       620       630       640       650     
pF1KE1 DDMLHFLNPEELRVIEEIPQAEDKLDRLFEIIGVKSQEASQTLLDSVYSHLPDLL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 DDMLHFLNPEELRVIEEIPQAEDKLDRLFEIIGVKSQEASQTLLDSVYSHLPDLL
              610       620       630       640       650     

>>CCDS6326.1 TNFRSF11B gene_id:4982|Hs108|chr8            (401 aa)
 initn: 475 init1: 378 opt: 417  Z-score: 362.0  bits: 76.6 E(32554): 7.6e-14
Smith-Waterman score: 417; 28.5% identity (50.0% similar) in 288 aa overlap (54-334:28-308)

            30        40        50        60        70        80   
pF1KE1 TMIAGSLLLLGFLSTTTAQPEQKASNLIGTYRHVDRATGQVLTCDKCPAGTYVSEHCTNT
                                     : : :. :.. : ::::: :::...:::  
CCDS63    MNNLLCCALVFLDISIKWTTQETFPPKYLHYDEETSHQLLCDKCPPGTYLKQHCTAK
                  10        20        30        40        50       

            90       100       110       120       130       140   
pF1KE1 SLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTDRECTCPPGMFQSNAT
          ::. ::   .:   .  ..:  ::  :   .  :  :    .: : :  : .     
CCDS63 WKTVCAPCPDHYYTDSWHTSDECLYCSPVCKELQYVKQECNRTHNRVCECKEGRYLEIEF
        60        70        80        90       100       110       

           150       160       170       180       190       200   
pF1KE1 CAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKAYTDCLSQNLVVIKPG
       :  :  :: :.:: . ::  ... ::.:  : ::.  ::   :. .:.:   .:.. . :
CCDS63 CLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCRKHTNCSVFGLLLTQKG
       120       130       140       150       160       170       

           210       220       230       240       250             
pF1KE1 TKETDNVCGTLPSFSSSTSPSPGTAIFPRPEHMETHEVPSSTYVPKGMN-------STES
       .   ::.:    : .: .. . :  .    : .    ::.. ..:. ..       .:. 
CCDS63 NATHDNIC----SGNSESTQKCGIDVTLCEEAFFRFAVPTK-FTPNWLSVLVDNLPGTKV
       180           190       200       210        220       230  

        260       270       280       290       300       310      
pF1KE1 NSSASVRPKVLSSIQEGTVPDNTSSARGKEDVNKTLPNLQVVNHQQGPHHRHILKLLPSM
       :. .  : :   : :: :        . ..: . .   .: ..  ..  .::: .   ..
CCDS63 NAESVERIKRQHSSQEQTFQLLKLWKHQNKDQDIVKKIIQDIDLCENSVQRHIGHANLTF
            240       250       260       270       280       290  

        320       330       340       350       360       370      
pF1KE1 EATGGEKSSTPIKGPKRGHPRQNLHKHFDINEHLPWMIVLFLLLVLVVIVVCSIRKSSRT
       :   .   : :  : : :                                          
CCDS63 EQLRSLMESLP--GKKVGAEDIEKTIKACKPSDQILKLLSLWRIKNGDQDTLKGLMHALK
            300         310       320       330       340       350

>>CCDS13532.1 TNFRSF6B gene_id:8771|Hs108|chr20           (300 aa)
 initn: 408 init1: 408 opt: 412  Z-score: 359.5  bits: 75.7 E(32554): 1e-13
Smith-Waterman score: 412; 33.2% identity (54.3% similar) in 199 aa overlap (29-226:10-207)

               10        20        30         40        50         
pF1KE1 MGTSPSSSTALASCSRIARRATATMIAGSLLLLGF-LSTTTAQPEQKASNLIGTYRHVDR
                                   ::: : . : .    :  ..     ::   : 
CCDS13                    MRALEGPGLSLLCLVLALPALLPVPAVRGVAETPTYPWRDA
                                  10        20        30        40 

      60        70        80        90       100       110         
pF1KE1 ATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIE
        ::. :.: .:: ::.:.. :   :  .:. ::   .:.  : .:.:. :.  :     :
CCDS13 ETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEE
              50        60        70        80        90       100 

     120       130       140       150       160       170         
pF1KE1 KLPCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDV
          : :  .: : :  :.:   . :  :. :: : ::   :: .....:. :  ::::  
CCDS13 ARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSAS
             110       120       130       140       150       160 

     180       190       200       210       220       230         
pF1KE1 PSSVMKCKAYTDCLSQNLVVIKPGTKETDNVCGTLPSFSSSTSPSPGTAIFPRPEHMETH
        ::  .:. . .: . .:..  ::..  :..: .  .:  ::   ::             
CCDS13 SSSSEQCQPHRNCTALGLALNVPGSSSHDTLCTSCTGFPLSTR-VPGAEECERAVIDFVA
             170       180       190       200        210       220

     240       250       260       270       280       290         
pF1KE1 EVPSSTYVPKGMNSTESNSSASVRPKVLSSIQEGTVPDNTSSARGKEDVNKTLPNLQVVN
                                                                   
CCDS13 FQDISIKRLQRLLQALEAPEGWGPTPRAGRAALQLKLRRRLTELLGAQDGALLVRLLQAL
              230       240       250       260       270       280

>>CCDS145.1 TNFRSF1B gene_id:7133|Hs108|chr1              (461 aa)
 initn: 429 init1: 187 opt: 414  Z-score: 358.6  bits: 76.1 E(32554): 1.2e-13
Smith-Waterman score: 445; 30.2% identity (55.4% similar) in 305 aa overlap (65-337:52-349)

           40        50        60        70        80        90    
pF1KE1 FLSTTTAQPEQKASNLIGTYRHVDRATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVG
                                     . :.::  : ...  ::.::  ::.::  .
CCDS14 ALPAQVAFTPYAPEPGSTCRLREYYDQTAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDS
              30        40        50        60        70        80 

          100       110       120       130             140        
pF1KE1 TFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTDRECTCPPGMF------QSNATCAPHT
       :.:.  : . .: .:.. :   ..:   :.   .: ::: :: .      ..   :::  
CCDS14 TYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRICTCRPGWYCALSKQEGCRLCAPLR
              90       100       110       120       130       140 

      150       160       170       180       190       200        
pF1KE1 VCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKAYTDCLSQNLVVIKPGTKETD
        :  :.:: . :::: :: :: :: ::::.. ::.  :. .  :   :.:.: ::.   :
CCDS14 KCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRPHQIC---NVVAI-PGNASMD
             150       160       170       180          190        

      210       220       230                240        250        
pF1KE1 NVCGTLPSFSSSTSPSPGTAIFPRP-----EHM----ETHEVPSSTYV-PKGMNSTESNS
        ::    : : . : .::.. .:.:     .:     :   .::.... : : .    .:
CCDS14 AVC---TSTSPTRSMAPGAVHLPQPVSTRSQHTQPTPEPSTAPSTSFLLPMGPSPPAEGS
       200          210       220       230       240       250    

      260               270       280           290         300    
pF1KE1 SAS--------VRPKVLSSIQEGTVPDNTSSARGKEDV----NKTLPNLQV--VNHQQGP
       ...        :   .:. .  :.:     .   :. .    .  .:.: .  .   :::
CCDS14 TGDFALPVGLIVGVTALGLLIIGVVNCVIMTQVKKKPLCLQREAKVPHLPADKARGTQGP
          260       270       280       290       300       310    

          310       320         330       340       350       360  
pF1KE1 HHRHILKLLPSMEATGGEKSSTPI--KGPKRGHPRQNLHKHFDINEHLPWMIVLFLLLVL
       ...:.:   ::  ... :.:.. .  ..: :..:.                         
CCDS14 EQQHLLITAPSSSSSSLESSASALDRRAPTRNQPQAPGVEASGAGEARASTGSSDSSPGG
          320       330       340       350       360       370    

            370       380       390       400       410       420  
pF1KE1 VVIVVCSIRKSSRTLKKGPRQDPSAIVEKAGLKKSMTPTQNREKWIYYCNGHGIDILKLV
                                                                   
CCDS14 HGTQVNVTCIVNVCSSSDHSSQCSSQASSTMGDTDSSPSESPKDEQVPFSKEECAFRSQL
          380       390       400       410       420       430    




655 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:59:47 2016 done: Mon Nov  7 00:59:47 2016
 Total Scan time:  4.150 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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