FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3587, 238 aa 1>>>pF1KE3587 238 - 238 aa - 238 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8037+/-0.000605; mu= 13.2222+/- 0.037 mean_var=81.8030+/-16.302, 0's: 0 Z-trim(114.1): 14 B-trim: 16 in 1/49 Lambda= 0.141804 statistics sampled from 14686 (14698) to 14686 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.451), width: 16 Scan time: 1.870 The best scores are: opt bits E(32554) CCDS1090.1 EFNA3 gene_id:1944|Hs108|chr1 ( 238) 1669 350.0 8e-97 CCDS12061.1 EFNA2 gene_id:1943|Hs108|chr19 ( 213) 561 123.3 1.3e-28 CCDS4097.1 EFNA5 gene_id:1946|Hs108|chr5 ( 228) 541 119.2 2.3e-27 CCDS1091.1 EFNA1 gene_id:1942|Hs108|chr1 ( 205) 495 109.8 1.4e-24 CCDS1092.1 EFNA1 gene_id:1942|Hs108|chr1 ( 183) 437 97.9 4.8e-21 CCDS1089.1 EFNA4 gene_id:1945|Hs108|chr1 ( 201) 333 76.6 1.3e-14 CCDS41407.1 EFNA4 gene_id:1945|Hs108|chr1 ( 193) 332 76.4 1.5e-14 CCDS44237.1 EFNA4 gene_id:1945|Hs108|chr1 ( 207) 324 74.8 4.8e-14 >>CCDS1090.1 EFNA3 gene_id:1944|Hs108|chr1 (238 aa) initn: 1669 init1: 1669 opt: 1669 Z-score: 1851.8 bits: 350.0 E(32554): 8e-97 Smith-Waterman score: 1669; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238) 10 20 30 40 50 60 pF1KE3 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQGFKRWECNRPHAPHSPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQGFKRWECNRPHAPHSPI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPVPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 KFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPVPT 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 LPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 LPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS 190 200 210 220 230 >>CCDS12061.1 EFNA2 gene_id:1943|Hs108|chr19 (213 aa) initn: 478 init1: 266 opt: 561 Z-score: 627.4 bits: 123.3 E(32554): 1.3e-28 Smith-Waterman score: 561; 53.4% identity (71.3% similar) in 174 aa overlap (2-165:4-170) 10 20 30 40 50 pF1KE3 MAAAPLL-LLLLLVPVPLLPLL-AQGPGGALGNRHAVYWNSSNQHLRRE------GYT : ::: :::::.:.: :. :. . : ..:.::::: :: ... ::: CCDS12 MAPAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYT 10 20 30 40 50 60 60 70 80 90 100 pF1KE3 VQVNVNDYLDIYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQ-GFKRWE :.:..::::::::::: :: :. :.::::::. .:. .:. : :::::: CCDS12 VEVSINDYLDIYCPHY-------GAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWE 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 CNRPHAPHSPIKFSEKFQRYSAFSLGYEFHAGHEYYYIS-TPTHNLHWKCLRMKVFVCCA :::: :: .:.::::::: .. ::::.::. :::::::: :: . . :::.::.: CCDS12 CNRPAAPGGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPT 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE3 STSHSGEKPVPTLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGI CCDS12 NETLYEAPEPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS 180 190 200 210 >>CCDS4097.1 EFNA5 gene_id:1946|Hs108|chr5 (228 aa) initn: 521 init1: 258 opt: 541 Z-score: 604.9 bits: 119.2 E(32554): 2.3e-27 Smith-Waterman score: 541; 49.7% identity (77.0% similar) in 161 aa overlap (8-165:6-158) 10 20 30 40 50 pF1KE3 MAAAPLLLLLLLVPVPLLPLLAQGPGG-ALGNRHAVYWNSSNQHLRREGYTVQVNVNDYL .: :. : . ...: ::. :...:.:::::::: ...: : ..: .:::: CCDS40 MLHVEMLTLVFLVLWMCVFSQDPGSKAVADRYAVYWNSSNPRFQRGDYHIDVCINDYL 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 DIYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCN-ASQGFKRWECNRPHAPHS :..::::..: : .:.::::::. .:: .:. .:.:::::::::::.:.. CCDS40 DVFCPHYEDSV--------PEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNG 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 PIKFSEKFQRYSAFSLGYEFHAGHEYYYISTPT-HNLHWKCLRMKVFVCCASTSHSGEKP :.::::::: .. ::::.::. :.::.:::. : . .::..:::: CCDS40 PLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFVRPTNSCMKTIGV 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 VPTLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLA CCDS40 HDRVFDVNDKVENSLEPADDTVHESAEPSRGENAAQTPRIPSRLLAILLFLLAMLLTL 180 190 200 210 220 >>CCDS1091.1 EFNA1 gene_id:1942|Hs108|chr1 (205 aa) initn: 503 init1: 271 opt: 495 Z-score: 554.7 bits: 109.8 E(32554): 1.4e-24 Smith-Waterman score: 504; 40.3% identity (66.1% similar) in 221 aa overlap (19-238:7-204) 10 20 30 40 50 60 pF1KE3 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD :::. . : ..::.:.::::: ..: : ::..:..:::.: CCDS10 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVD 10 20 30 40 70 80 90 100 110 pF1KE3 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNA-SQGFKRWECNRPHAPHSP : ::::.. .:. .: :::.::.: .. :. :. :. ::.:::: : :.: CCDS10 IICPHYEDHSVADAA-------MEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGP 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE3 IKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPVP :.::::::.. :.:: ::. :: ::::: : :. . .:::.:: : .. .:: CCDS10 EKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTVS-GKITHS------ 110 120 130 140 150 180 190 200 210 220 230 pF1KE3 TLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS :: .:. : . ...:.: .. .:: : : . .::: . .. . .: . CCDS10 --PQAHDNPQEK-----RLAADDPEV-RVLHSI-GHSAAPRLFPLAWTVLLLPLLLLQTP 160 170 180 190 200 >>CCDS1092.1 EFNA1 gene_id:1942|Hs108|chr1 (183 aa) initn: 448 init1: 216 opt: 437 Z-score: 491.3 bits: 97.9 E(32554): 4.8e-21 Smith-Waterman score: 437; 49.6% identity (74.0% similar) in 131 aa overlap (19-148:7-130) 10 20 30 40 50 60 pF1KE3 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD :::. . : ..::.:.::::: ..: : ::..:..:::.: CCDS10 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVD 10 20 30 40 70 80 90 100 110 pF1KE3 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNA-SQGFKRWECNRPHAPHSP : ::::.. .:. .: :::.::.: .. :. :. :. ::.:::: : :.: CCDS10 IICPHYEDHSVADAA-------MEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGP 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE3 IKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPVP :.::::::.. :.:: ::. :: ::::: CCDS10 EKLSEKFQRFTPFTLGKEFKEGHSYYYISHSPQAHDNPQEKRLAADDPEVRVLHSIGHSA 110 120 130 140 150 160 >>CCDS1089.1 EFNA4 gene_id:1945|Hs108|chr1 (201 aa) initn: 378 init1: 218 opt: 333 Z-score: 375.7 bits: 76.6 E(32554): 1.3e-14 Smith-Waterman score: 474; 45.1% identity (67.6% similar) in 173 aa overlap (8-178:3-164) 10 20 30 40 50 60 pF1KE3 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD :: :: : .:.. :. . ::.::::::: .: : .:....::::: CCDS10 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLD 10 20 30 40 50 70 80 90 100 110 pF1KE3 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNAS--QGFKRWECNRPHAPHS : ::::. :::: : : ..::::. ::..:.: ...::: :. : . : CCDS10 IVCPHYE--------GPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFG-H- 60 70 80 90 100 120 130 140 150 160 170 pF1KE3 PIKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPV ..::::.::.. ::::.:: :. :::::.:: . .:::..: ::: . . .:: CCDS10 -VQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPV 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE3 PTLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS CCDS10 GSPGESGTSGWRGGDTPSPLCLLLLLLLLILRLLRIL 170 180 190 200 >>CCDS41407.1 EFNA4 gene_id:1945|Hs108|chr1 (193 aa) initn: 385 init1: 209 opt: 332 Z-score: 374.9 bits: 76.4 E(32554): 1.5e-14 Smith-Waterman score: 476; 40.7% identity (63.4% similar) in 216 aa overlap (8-221:3-193) 10 20 30 40 50 60 pF1KE3 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD :: :: : .:.. :. . ::.::::::: .: : .:....::::: CCDS41 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLD 10 20 30 40 50 70 80 90 100 110 pF1KE3 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNAS--QGFKRWECNRPHAPHS : ::::. :::: : : ..::::. ::..:.: ...::: :. : . : CCDS41 IVCPHYE--------GPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFG-H- 60 70 80 90 100 120 130 140 150 160 170 pF1KE3 PIKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPV ..::::.::.. ::::.:: :. :::::.:: . .:::..: ::: :. . CCDS41 -VQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCK------ERNL 110 120 130 140 150 180 190 200 210 220 230 pF1KE3 PTLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS :. :. :. . . ::. :. .: : .. . : :: CCDS41 PSHPKE---PESSQDPLEE---EGSLLPAL--GVPIQTDKMEH 160 170 180 190 >>CCDS44237.1 EFNA4 gene_id:1945|Hs108|chr1 (207 aa) initn: 406 init1: 209 opt: 324 Z-score: 365.6 bits: 74.8 E(32554): 4.8e-14 Smith-Waterman score: 465; 46.9% identity (69.1% similar) in 162 aa overlap (8-167:3-153) 10 20 30 40 50 60 pF1KE3 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD :: :: : .:.. :. . ::.::::::: .: : .:....::::: CCDS44 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLD 10 20 30 40 50 70 80 90 100 110 pF1KE3 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNAS--QGFKRWECNRPHAPHS : ::::. :::: : : ..::::. ::..:.: ...::: :. : . : CCDS44 IVCPHYE--------GPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFG-H- 60 70 80 90 100 120 130 140 150 160 170 pF1KE3 PIKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPV ..::::.::.. ::::.:: :. :::::.:: . .:::..: ::: CCDS44 -VQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERRARVLPRS 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE3 PTLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS CCDS44 PGGGGIPAACTGGANSDRQDGALMGEIRGSEVTLAGACPLITG 170 180 190 200 238 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:00:24 2016 done: Mon Nov 7 01:00:24 2016 Total Scan time: 1.870 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]