FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1547, 591 aa 1>>>pF1KE1547 591 - 591 aa - 591 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7062+/-0.000833; mu= 16.7889+/- 0.050 mean_var=69.5707+/-13.890, 0's: 0 Z-trim(107.1): 67 B-trim: 0 in 0/49 Lambda= 0.153766 statistics sampled from 9305 (9372) to 9305 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.288), width: 16 Scan time: 2.680 The best scores are: opt bits E(32554) CCDS4200.2 CDC23 gene_id:8697|Hs108|chr5 ( 597) 3922 879.3 0 CCDS74090.1 CDC27 gene_id:996|Hs108|chr17 ( 823) 401 98.3 4.2e-20 CCDS11509.1 CDC27 gene_id:996|Hs108|chr17 ( 824) 401 98.3 4.2e-20 CCDS45720.1 CDC27 gene_id:996|Hs108|chr17 ( 830) 401 98.3 4.2e-20 >>CCDS4200.2 CDC23 gene_id:8697|Hs108|chr5 (597 aa) initn: 3922 init1: 3922 opt: 3922 Z-score: 4698.0 bits: 879.3 E(32554): 0 Smith-Waterman score: 3922; 100.0% identity (100.0% similar) in 591 aa overlap (1-591:7-597) 10 20 30 40 50 pF1KE1 MVPVAVTAAVAPVLSINSDFSDLREIKKQLLLIAGLTRERGLLHSSKWSAELAF :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MAASTSMVPVAVTAAVAPVLSINSDFSDLREIKKQLLLIAGLTRERGLLHSSKWSAELAF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 SLPALPLAELQPPPPITEEDAQDMDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 SLPALPLAELQPPPPITEEDAQDMDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMY 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 SRYLSGEKKKDDETVDSLGPLEKGQVKNEALRELRVELSKKHQARELDGFGLYLYGVVLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 SRYLSGEKKKDDETVDSLGPLEKGQVKNEALRELRVELSKKHQARELDGFGLYLYGVVLR 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 KLDLVKEAIDVFVEATHVLPLHWGAWLELCNLITDKEMLKFLSLPDTWMKEFFLAHIYTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 KLDLVKEAIDVFVEATHVLPLHWGAWLELCNLITDKEMLKFLSLPDTWMKEFFLAHIYTE 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE1 LQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 LQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENM 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE1 DTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 DTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKL 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE1 NPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 NPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLY 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE1 YYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 YYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQL 430 440 450 460 470 480 480 490 500 510 520 530 pF1KE1 TESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDEASTCAQKCCAFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 TESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDEASTCAQKCCAFN 490 500 510 520 530 540 540 550 560 570 580 590 pF1KE1 DTREEGKALLRQILQLRNQGETPTTEVPAPFFLPASLSANNTPTRRVSPLNLSSVTP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 DTREEGKALLRQILQLRNQGETPTTEVPAPFFLPASLSANNTPTRRVSPLNLSSVTP 550 560 570 580 590 >>CCDS74090.1 CDC27 gene_id:996|Hs108|chr17 (823 aa) initn: 496 init1: 370 opt: 401 Z-score: 474.4 bits: 98.3 E(32554): 4.2e-20 Smith-Waterman score: 405; 30.0% identity (62.7% similar) in 263 aa overlap (256-516:497-748) 230 240 250 260 270 280 pF1KE1 FFLAHIYTELQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRK ..... ::. :: .. . .: ::.:.:. CCDS74 EMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRR 470 480 490 500 510 520 290 300 310 320 330 340 pF1KE1 QDPYRIENMDTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAA . ::.:.:. .:. :. . :: :...: ..:: :. :. :: .::. .:. : CCDS74 IENYRVEGMEIYSTTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAI 530 540 550 560 570 580 350 360 370 380 390 400 pF1KE1 LYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEI .::::....: : :.::.:::.. .. . :. .:.::.:: : : ::::::. : CCDS74 KFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIY-- 590 600 610 620 630 640 410 420 430 440 450 460 pF1KE1 LKMPFYCL--YYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKMA :. . : .....: .. :..: .: .: . :.. .: .: .. : .. CCDS74 YKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVI-DPKN-- 650 660 670 680 690 700 470 480 490 500 510 520 pF1KE1 LVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDEA : :.:. . : . : . .:.. .:: .:: .. ... : : CCDS74 --PLCKFHR--ASVLFANEKYKSALQELEELKQIVP--KESLVYFLIGKVYKKLGQTHLA 710 720 730 740 750 530 540 550 560 570 580 pF1KE1 STCAQKCCAFNDTREEGKALLRQILQLRNQGETPTTEVPAPFFLPASLSANNTPTRRVSP CCDS74 LMNFSWAMDLDPKGANNQIKEAIDKRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQL 760 770 780 790 800 810 >>CCDS11509.1 CDC27 gene_id:996|Hs108|chr17 (824 aa) initn: 496 init1: 370 opt: 401 Z-score: 474.4 bits: 98.3 E(32554): 4.2e-20 Smith-Waterman score: 405; 30.0% identity (62.7% similar) in 263 aa overlap (256-516:498-749) 230 240 250 260 270 280 pF1KE1 FFLAHIYTELQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRK ..... ::. :: .. . .: ::.:.:. CCDS11 EMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRR 470 480 490 500 510 520 290 300 310 320 330 340 pF1KE1 QDPYRIENMDTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAA . ::.:.:. .:. :. . :: :...: ..:: :. :. :: .::. .:. : CCDS11 IENYRVEGMEIYSTTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAI 530 540 550 560 570 580 350 360 370 380 390 400 pF1KE1 LYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEI .::::....: : :.::.:::.. .. . :. .:.::.:: : : ::::::. : CCDS11 KFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIY-- 590 600 610 620 630 640 410 420 430 440 450 460 pF1KE1 LKMPFYCL--YYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKMA :. . : .....: .. :..: .: .: . :.. .: .: .. : .. CCDS11 YKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVI-DPKN-- 650 660 670 680 690 700 470 480 490 500 510 520 pF1KE1 LVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDEA : :.:. . : . : . .:.. .:: .:: .. ... : : CCDS11 --PLCKFHR--ASVLFANEKYKSALQELEELKQIVP--KESLVYFLIGKVYKKLGQTHLA 710 720 730 740 750 530 540 550 560 570 580 pF1KE1 STCAQKCCAFNDTREEGKALLRQILQLRNQGETPTTEVPAPFFLPASLSANNTPTRRVSP CCDS11 LMNFSWAMDLDPKGANNQIKEAIDKRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQL 760 770 780 790 800 810 >>CCDS45720.1 CDC27 gene_id:996|Hs108|chr17 (830 aa) initn: 496 init1: 370 opt: 401 Z-score: 474.4 bits: 98.3 E(32554): 4.2e-20 Smith-Waterman score: 405; 30.0% identity (62.7% similar) in 263 aa overlap (256-516:504-755) 230 240 250 260 270 280 pF1KE1 FFLAHIYTELQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRK ..... ::. :: .. . .: ::.:.:. CCDS45 EMGKGYLALCSYNCKEAINILSHLPSHHYNTGWVLCQIGRAYFELSEYMQAERIFSEVRR 480 490 500 510 520 530 290 300 310 320 330 340 pF1KE1 QDPYRIENMDTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAA . ::.:.:. .:. :. . :: :...: ..:: :. :. :: .::. .:. : CCDS45 IENYRVEGMEIYSTTLWHLQKDVALSVLSKDLTDMDKNSPEAWCAAGNCFSLQREHDIAI 540 550 560 570 580 590 350 360 370 380 390 400 pF1KE1 LYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEI .::::....: : :.::.:::.. .. . :. .:.::.:: : : ::::::. : CCDS45 KFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLGMIY-- 600 610 620 630 640 650 410 420 430 440 450 460 pF1KE1 LKMPFYCL--YYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKMA :. . : .....: .. :..: .: .: . :.. .: .: .. : .. CCDS45 YKQEKFSLAEMHFQKALDINPQSSVLLCHIGVVQHALKKSEKALDTLNKAIVI-DPKN-- 660 670 680 690 700 470 480 490 500 510 520 pF1KE1 LVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDEA : :.:. . : . : . .:.. .:: .:: .. ... : : CCDS45 --PLCKFHR--ASVLFANEKYKSALQELEELKQIVP--KESLVYFLIGKVYKKLGQTHLA 710 720 730 740 750 760 530 540 550 560 570 580 pF1KE1 STCAQKCCAFNDTREEGKALLRQILQLRNQGETPTTEVPAPFFLPASLSANNTPTRRVSP CCDS45 LMNFSWAMDLDPKGANNQIKEAIDKRYLPDDEEPITQEEQIMGTDESQESSMTDADDTQL 770 780 790 800 810 820 591 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:01:02 2016 done: Mon Nov 7 01:01:03 2016 Total Scan time: 2.680 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]