Result of FASTA (omim) for
pFN21AB6521
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6521, 363 aa
1>>>pF1KB6521 363 - 363 aa - 363 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9766+/-0.000381; mu= 13.3288+/- 0.024
mean_var=88.6710+/-17.546, 0's: 0 Z-trim(114.1): 64 B-trim: 0 in 0/52
Lambda= 0.136202
statistics sampled from 23667 (23731) to 23667 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.278), width: 16
Scan time: 8.560
The best scores are: opt bits E(85289)
NP_853551 (OMIM: 102577) replication factor C subu ( 363) 2321 466.2 5.1e-131
NP_002907 (OMIM: 102577) replication factor C subu ( 363) 2321 466.2 5.1e-131
NP_001193730 (OMIM: 600407) replication factor C s ( 337) 741 155.7 1.4e-37
NP_031396 (OMIM: 600407) replication factor C subu ( 340) 738 155.1 2.1e-37
XP_011536945 (OMIM: 600407) PREDICTED: replication ( 340) 738 155.1 2.1e-37
XP_011536947 (OMIM: 600407) PREDICTED: replication ( 340) 738 155.1 2.1e-37
NP_853556 (OMIM: 600407) replication factor C subu ( 319) 706 148.8 1.5e-35
XP_016875268 (OMIM: 600407) PREDICTED: replication ( 304) 700 147.6 3.4e-35
NP_852136 (OMIM: 600404) replication factor C subu ( 354) 673 142.4 1.5e-33
NP_001123584 (OMIM: 600407) replication factor C s ( 255) 515 111.2 2.6e-24
XP_016867981 (OMIM: 600404) PREDICTED: replication ( 253) 479 104.2 3.4e-22
NP_001265720 (OMIM: 600404) replication factor C s ( 253) 479 104.2 3.4e-22
NP_001265721 (OMIM: 600404) replication factor C s ( 251) 443 97.1 4.6e-20
NP_002905 (OMIM: 600404) replication factor C subu ( 320) 349 78.7 2e-14
NP_001265722 (OMIM: 600404) replication factor C s ( 219) 346 78.0 2.2e-14
XP_016867982 (OMIM: 600404) PREDICTED: replication ( 217) 333 75.4 1.3e-13
XP_006716143 (OMIM: 600404) PREDICTED: replication ( 217) 333 75.4 1.3e-13
XP_016876172 (OMIM: 600405) PREDICTED: replication ( 291) 235 56.3 1e-07
XP_016876171 (OMIM: 600405) PREDICTED: replication ( 293) 235 56.3 1e-07
XP_011533476 (OMIM: 600405) PREDICTED: replication ( 297) 235 56.3 1.1e-07
XP_011533477 (OMIM: 600405) PREDICTED: replication ( 297) 235 56.3 1.1e-07
XP_016876170 (OMIM: 600405) PREDICTED: replication ( 297) 235 56.3 1.1e-07
XP_011533475 (OMIM: 600405) PREDICTED: replication ( 298) 235 56.3 1.1e-07
NP_853536 (OMIM: 600405) replication factor C subu ( 305) 235 56.3 1.1e-07
XP_016876169 (OMIM: 600405) PREDICTED: replication ( 313) 235 56.3 1.1e-07
XP_011533474 (OMIM: 600405) PREDICTED: replication ( 343) 235 56.3 1.2e-07
NP_002906 (OMIM: 600405) replication factor C subu ( 356) 235 56.3 1.2e-07
XP_011512032 (OMIM: 102579) PREDICTED: replication (1122) 194 48.6 8.3e-05
NP_001191676 (OMIM: 102579) replication factor C s (1148) 194 48.6 8.5e-05
XP_016864017 (OMIM: 102579) PREDICTED: replication (1121) 191 48.0 0.00013
NP_002904 (OMIM: 102579) replication factor C subu (1147) 191 48.0 0.00013
>>NP_853551 (OMIM: 102577) replication factor C subunit (363 aa)
initn: 2321 init1: 2321 opt: 2321 Z-score: 2473.2 bits: 466.2 E(85289): 5.1e-131
Smith-Waterman score: 2321; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)
10 20 30 40 50 60
pF1KB6 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 HAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_853 HAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLS
310 320 330 340 350 360
pF1KB6 QNC
:::
NP_853 QNC
>>NP_002907 (OMIM: 102577) replication factor C subunit (363 aa)
initn: 2321 init1: 2321 opt: 2321 Z-score: 2473.2 bits: 466.2 E(85289): 5.1e-131
Smith-Waterman score: 2321; 100.0% identity (100.0% similar) in 363 aa overlap (1-363:1-363)
10 20 30 40 50 60
pF1KB6 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 HAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 HAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLS
310 320 330 340 350 360
pF1KB6 QNC
:::
NP_002 QNC
>>NP_001193730 (OMIM: 600407) replication factor C subun (337 aa)
initn: 714 init1: 388 opt: 741 Z-score: 795.8 bits: 155.7 E(85289): 1.4e-37
Smith-Waterman score: 741; 40.0% identity (70.9% similar) in 320 aa overlap (34-353:16-324)
10 20 30 40 50 60
pF1KB6 FLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLK
: . .::::::::. .... .........
NP_001 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQ
10 20 30 40
70 80 90 100 110 120
pF1KB6 KSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKV
: .. ::.::.:::::::::::::: :..:. . : ::::::::.:::...: .
NP_001 KFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 KNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYV
.::. .:. : ::.:::::::.::. :: ::::..:: ...:::::::::.
NP_001 LSFAS-----TRTIFKK--GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL
110 120 130 140 150
190 200 210 220 230 240
pF1KB6 SRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAIT
:.:: : :::..::: ::. ... :: ....:.: ::..:. :: .: ::.:.:..
NP_001 SKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALN
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 FLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAA
.::: : .. :: .::... .: : ... . .: .: : .: :
NP_001 ILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRKLKTL--KGLAL
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 TQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQNC
......: : . .. .. . . :.:... :. :..:..:: :: :
NP_001 HDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIV
280 290 300 310 320 330
NP_001 AEA
>>NP_031396 (OMIM: 600407) replication factor C subunit (340 aa)
initn: 714 init1: 388 opt: 738 Z-score: 792.6 bits: 155.1 E(85289): 2.1e-37
Smith-Waterman score: 738; 39.6% identity (70.7% similar) in 321 aa overlap (34-353:16-327)
10 20 30 40 50 60
pF1KB6 FLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLK
: . .::::::::. .... .........
NP_031 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQ
10 20 30 40
70 80 90 100 110 120
pF1KB6 KSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKV
: .. ::.::.:::::::::::::: :..:. . : ::::::::.:::...: .
NP_031 KFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 KNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYV
.::. .:. : ::.:::::::.::. :: ::::..:: ...:::::::::.
NP_031 LSFAS-----TRTIFKK--GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL
110 120 130 140 150
190 200 210 220 230 240
pF1KB6 SRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAIT
:.:: : :::..::: ::. ... :: ....:.: ::..:. :: .: ::.:.:..
NP_031 SKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALN
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 FLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLID-EGHA
.::: : .. :: .::... .: : ... . .: . .: .: :
NP_031 ILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLA
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 ATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQN
......: : . .. .. . . :.:... :. :..:..:: :: :
NP_031 LHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLI
280 290 300 310 320 330
pF1KB6 C
NP_031 VAEA
340
>>XP_011536945 (OMIM: 600407) PREDICTED: replication fac (340 aa)
initn: 714 init1: 388 opt: 738 Z-score: 792.6 bits: 155.1 E(85289): 2.1e-37
Smith-Waterman score: 738; 39.6% identity (70.7% similar) in 321 aa overlap (34-353:16-327)
10 20 30 40 50 60
pF1KB6 FLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLK
: . .::::::::. .... .........
XP_011 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQ
10 20 30 40
70 80 90 100 110 120
pF1KB6 KSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKV
: .. ::.::.:::::::::::::: :..:. . : ::::::::.:::...: .
XP_011 KFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 KNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYV
.::. .:. : ::.:::::::.::. :: ::::..:: ...:::::::::.
XP_011 LSFAS-----TRTIFKK--GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL
110 120 130 140 150
190 200 210 220 230 240
pF1KB6 SRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAIT
:.:: : :::..::: ::. ... :: ....:.: ::..:. :: .: ::.:.:..
XP_011 SKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALN
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 FLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLID-EGHA
.::: : .. :: .::... .: : ... . .: . .: .: :
XP_011 ILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLA
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 ATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQN
......: : . .. .. . . :.:... :. :..:..:: :: :
XP_011 LHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLI
280 290 300 310 320 330
pF1KB6 C
XP_011 VAEA
340
>>XP_011536947 (OMIM: 600407) PREDICTED: replication fac (340 aa)
initn: 714 init1: 388 opt: 738 Z-score: 792.6 bits: 155.1 E(85289): 2.1e-37
Smith-Waterman score: 738; 39.6% identity (70.7% similar) in 321 aa overlap (34-353:16-327)
10 20 30 40 50 60
pF1KB6 FLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLK
: . .::::::::. .... .........
XP_011 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQ
10 20 30 40
70 80 90 100 110 120
pF1KB6 KSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKV
: .. ::.::.:::::::::::::: :..:. . : ::::::::.:::...: .
XP_011 KFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 KNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYV
.::. .:. : ::.:::::::.::. :: ::::..:: ...:::::::::.
XP_011 LSFAS-----TRTIFKK--GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL
110 120 130 140 150
190 200 210 220 230 240
pF1KB6 SRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAIT
:.:: : :::..::: ::. ... :: ....:.: ::..:. :: .: ::.:.:..
XP_011 SKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALN
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 FLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLID-EGHA
.::: : .. :: .::... .: : ... . .: . .: .: :
XP_011 ILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLA
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 ATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQN
......: : . .. .. . . :.:... :. :..:..:: :: :
XP_011 LHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLI
280 290 300 310 320 330
pF1KB6 C
XP_011 VAEA
340
>>NP_853556 (OMIM: 600407) replication factor C subunit (319 aa)
initn: 682 init1: 388 opt: 706 Z-score: 759.0 bits: 148.8 E(85289): 1.5e-35
Smith-Waterman score: 706; 39.5% identity (70.7% similar) in 314 aa overlap (41-353:2-306)
20 30 40 50 60 70
pF1KB6 STKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGAD
::::::. .... .........: ..
NP_853 MVEKYRPQTLNDLISHQDILSTIQKFINEDR
10 20 30
80 90 100 110 120 130
pF1KB6 LPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLT
::.::.:::::::::::::: :..:. . : ::::::::.:::...: . .::
NP_853 LPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFA---
40 50 60 70 80
140 150 160 170 180 190
pF1KB6 VSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPL
..:. : ::.:::::::.::. :: ::::..:: ...:::::::::.:.:: :
NP_853 --STRTIFKK--GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPAL
90 100 110 120 130 140
200 210 220 230 240 250
pF1KB6 TSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATR
:::..::: ::. ... :: ....:.: ::..:. :: .: ::.:.:...::: :
NP_853 QSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQS-TN
150 160 170 180 190 200
260 270 280 290 300
pF1KB6 LTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLID-EGHAATQLVNQ
.. :: .::... .: : ... . .: . .: .: : .....
NP_853 MAFGK-VTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTE
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB6 LHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQNC
.: : . .. .. . . :.:... :. :..:..:: :: :
NP_853 IHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
270 280 290 300 310
>>XP_016875268 (OMIM: 600407) PREDICTED: replication fac (304 aa)
initn: 714 init1: 388 opt: 700 Z-score: 752.9 bits: 147.6 E(85289): 3.4e-35
Smith-Waterman score: 700; 41.5% identity (71.4% similar) in 287 aa overlap (34-319:16-293)
10 20 30 40 50 60
pF1KB6 FLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLK
: . .::::::::. .... .........
XP_016 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQ
10 20 30 40
70 80 90 100 110 120
pF1KB6 KSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKV
: .. ::.::.:::::::::::::: :..:. . : ::::::::.:::...: .
XP_016 KFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB6 KNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYV
.::. .:. : ::.:::::::.::. :: ::::..:: ...:::::::::.
XP_016 LSFAS-----TRTIFKK--GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL
110 120 130 140 150
190 200 210 220 230 240
pF1KB6 SRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAIT
:.:: : :::..::: ::. ... :: ....:.: ::..:. :: .: ::.:.:..
XP_016 SKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALN
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 FLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLID-EGHA
.::: : .. :: .::... .: : ... . .: . .: .: :
XP_016 ILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLA
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 ATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQN
......: : ..::
XP_016 LHDILTEIHLFVHRGNLHYPPAEKLWRR
280 290 300
>>NP_852136 (OMIM: 600404) replication factor C subunit (354 aa)
initn: 639 init1: 347 opt: 673 Z-score: 723.3 bits: 142.4 E(85289): 1.5e-33
Smith-Waterman score: 676; 37.1% identity (67.1% similar) in 334 aa overlap (27-358:29-347)
10 20 30 40 50
pF1KB6 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEV
::.:. . .:::::::: ..:.. .:..
NP_852 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYE----LPWVEKYRPVKLNEIVGNEDT
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 VAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQV
:. :. . ...::... ::::::::..:: :: :.:: : . .::::::..:::.:
NP_852 VSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL-KDAMLELNASNDRGIDV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 VREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCL
::.:.: ::: :. . :. ::.:::::::::..:: ::::::: :::::: :
NP_852 VRNKIKMFAQQKVTLPK--GR----HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFAL
120 130 140 150 160
180 190 200 210 220 230
pF1KB6 ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDL
:: ..::::. :::. .:. :.: ::... .:: : .:.:. .. ...::.
NP_852 ACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDM
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB6 RKAITFLQSATRLTG--GKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDL
:.:.. :::. : ..: . :: . .. : :. : ....:. .. :
NP_852 RQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQH----CVNANIDEAYKILAHL
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB6 IDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVM
:.. ...... : .... : . .... . .:.:.. ::. .: : .
NP_852 WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLC
290 300 310 320 330 340
360
pF1KB6 QQLSQNC
:.
NP_852 QKTMAPVAS
350
>>NP_001123584 (OMIM: 600407) replication factor C subun (255 aa)
initn: 491 init1: 388 opt: 515 Z-score: 557.6 bits: 111.2 E(85289): 2.6e-24
Smith-Waterman score: 515; 38.4% identity (68.8% similar) in 250 aa overlap (105-353:2-242)
80 90 100 110 120 130
pF1KB6 LFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGS
::::::::.:::...: . .::. .
NP_001 MVLELNASDDRGIDIIRGPILSFAS-----T
10 20
140 150 160 170 180 190
pF1KB6 RSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRC
:. : ::.:::::::.::. :: ::::..:: ...:::::::::.:.:: : :::
NP_001 RTIFKK--GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRC
30 40 50 60 70 80
200 210 220 230 240 250
pF1KB6 SKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGG
..::: ::. ... :: ....:.: ::..:. :: .: ::.:.:...::: : .. :
NP_001 TRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQS-TNMAFG
90 100 110 120 130 140
260 270 280 290 300 310
pF1KB6 KEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLID-EGHAATQLVNQLHDV
: .::... .: : ... . .: . .: .: : ......:
NP_001 K-VTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLF
150 160 170 180 190 200
320 330 340 350 360
pF1KB6 VVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQNC
: . .. .. . . :.:... :. :..:..:: :: :
NP_001 VHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
210 220 230 240 250
363 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 04:13:03 2016 done: Sat Nov 5 04:13:05 2016
Total Scan time: 8.560 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]