Result of FASTA (omim) for
pFN21AB6713
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6713, 80 aa
1>>>pF1KB6713 80 - 80 aa - 80 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8721+/-0.000326; mu= 8.6922+/- 0.020
mean_var=45.3406+/- 9.260, 0's: 0 Z-trim(114.8): 28 B-trim: 1112 in 1/52
Lambda= 0.190472
statistics sampled from 24872 (24900) to 24872 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.292), width: 16
Scan time: 3.780
The best scores are: opt bits E(85289)
NP_009011 (OMIM: 607286) U6 snRNA-associated Sm-li ( 80) 521 150.2 3.4e-37
XP_016863162 (OMIM: 607286) PREDICTED: U6 snRNA-as ( 80) 521 150.2 3.4e-37
XP_016863161 (OMIM: 607286) PREDICTED: U6 snRNA-as ( 80) 521 150.2 3.4e-37
NP_003086 (OMIM: 603541) small nuclear ribonucleop ( 86) 238 72.4 9.4e-14
NP_003087 (OMIM: 603542) small nuclear ribonucleop ( 76) 137 44.6 1.9e-05
NP_001304095 (OMIM: 603542) small nuclear ribonucl ( 75) 128 42.2 0.0001
NP_001304098 (OMIM: 603542) small nuclear ribonucl ( 64) 120 39.9 0.00041
NP_001304097 (OMIM: 603542) small nuclear ribonucl ( 64) 120 39.9 0.00041
NP_001304096 (OMIM: 603542) small nuclear ribonucl ( 68) 120 40.0 0.00044
NP_001304100 (OMIM: 603542) small nuclear ribonucl ( 58) 118 39.4 0.00055
NP_067000 (OMIM: 607282) U6 snRNA-associated Sm-li ( 95) 106 36.1 0.0085
>>NP_009011 (OMIM: 607286) U6 snRNA-associated Sm-like p (80 aa)
initn: 521 init1: 521 opt: 521 Z-score: 788.7 bits: 150.2 E(85289): 3.4e-37
Smith-Waterman score: 521; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:1-80)
10 20 30 40 50 60
pF1KB6 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
10 20 30 40 50 60
70 80
pF1KB6 GDAFIRGNNVLYISTQKRRM
::::::::::::::::::::
NP_009 GDAFIRGNNVLYISTQKRRM
70 80
>>XP_016863162 (OMIM: 607286) PREDICTED: U6 snRNA-associ (80 aa)
initn: 521 init1: 521 opt: 521 Z-score: 788.7 bits: 150.2 E(85289): 3.4e-37
Smith-Waterman score: 521; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:1-80)
10 20 30 40 50 60
pF1KB6 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
10 20 30 40 50 60
70 80
pF1KB6 GDAFIRGNNVLYISTQKRRM
::::::::::::::::::::
XP_016 GDAFIRGNNVLYISTQKRRM
70 80
>>XP_016863161 (OMIM: 607286) PREDICTED: U6 snRNA-associ (80 aa)
initn: 521 init1: 521 opt: 521 Z-score: 788.7 bits: 150.2 E(85289): 3.4e-37
Smith-Waterman score: 521; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:1-80)
10 20 30 40 50 60
pF1KB6 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
10 20 30 40 50 60
70 80
pF1KB6 GDAFIRGNNVLYISTQKRRM
::::::::::::::::::::
XP_016 GDAFIRGNNVLYISTQKRRM
70 80
>>NP_003086 (OMIM: 603541) small nuclear ribonucleoprote (86 aa)
initn: 236 init1: 236 opt: 238 Z-score: 367.9 bits: 72.4 E(85289): 9.4e-14
Smith-Waterman score: 238; 50.7% identity (80.8% similar) in 73 aa overlap (1-73:1-72)
10 20 30 40 50 60
pF1KB6 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
::: .:. ::. . :.::.:::. :..:.: :. .:::::. : .::::..: :...
NP_003 MSL-PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHL
10 20 30 40 50
70 80
pF1KB6 GDAFIRGNNVLYISTQKRRM
:...:: ::::::
NP_003 GEVLIRCNNVLYIRGVEEEEEDGEMRE
60 70 80
>>NP_003087 (OMIM: 603542) small nuclear ribonucleoprote (76 aa)
initn: 158 init1: 133 opt: 137 Z-score: 218.8 bits: 44.6 E(85289): 1.9e-05
Smith-Waterman score: 137; 27.6% identity (69.7% similar) in 76 aa overlap (3-78:1-75)
10 20 30 40 50 60
pF1KB6 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
. : : . ::... . . .:::.: .:.: .: .::..... :.... .:.
NP_003 MSKAHPPE-LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI
10 20 30 40 50
70 80
pF1KB6 GDAFIRGNNVLYISTQKRRM
: . ::::..... . .:
NP_003 GMVVIRGNSIIMLEALERV
60 70
>>NP_001304095 (OMIM: 603542) small nuclear ribonucleopr (75 aa)
initn: 136 init1: 97 opt: 128 Z-score: 205.5 bits: 42.2 E(85289): 0.0001
Smith-Waterman score: 128; 27.6% identity (68.4% similar) in 76 aa overlap (3-78:1-74)
10 20 30 40 50 60
pF1KB6 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
. : : . ::... . . .:::.: .:.: .: .::..... :.... .:.
NP_001 MSKAHPPE-LKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI
10 20 30 40 50
70 80
pF1KB6 GDAFIRGNNVLYISTQKRRM
: ::::..... . .:
NP_001 G-MVIRGNSIIMLEALERV
60 70
>>NP_001304098 (OMIM: 603542) small nuclear ribonucleopr (64 aa)
initn: 142 init1: 117 opt: 120 Z-score: 194.8 bits: 39.9 E(85289): 0.00041
Smith-Waterman score: 120; 27.0% identity (71.4% similar) in 63 aa overlap (16-78:1-63)
10 20 30 40 50 60
pF1KB6 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
. . . .:::.: .:.: .: .::..... :.... .:.
NP_001 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI
10 20 30 40
70 80
pF1KB6 GDAFIRGNNVLYISTQKRRM
: . ::::..... . .:
NP_001 GMVVIRGNSIIMLEALERV
50 60
>>NP_001304097 (OMIM: 603542) small nuclear ribonucleopr (64 aa)
initn: 142 init1: 117 opt: 120 Z-score: 194.8 bits: 39.9 E(85289): 0.00041
Smith-Waterman score: 120; 27.0% identity (71.4% similar) in 63 aa overlap (16-78:1-63)
10 20 30 40 50 60
pF1KB6 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
. . . .:::.: .:.: .: .::..... :.... .:.
NP_001 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI
10 20 30 40
70 80
pF1KB6 GDAFIRGNNVLYISTQKRRM
: . ::::..... . .:
NP_001 GMVVIRGNSIIMLEALERV
50 60
>>NP_001304096 (OMIM: 603542) small nuclear ribonucleopr (68 aa)
initn: 142 init1: 117 opt: 120 Z-score: 194.4 bits: 40.0 E(85289): 0.00044
Smith-Waterman score: 120; 27.0% identity (71.4% similar) in 63 aa overlap (16-78:5-67)
10 20 30 40 50 60
pF1KB6 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
. . . .:::.: .:.: .: .::..... :.... .:.
NP_001 MCLFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI
10 20 30 40
70 80
pF1KB6 GDAFIRGNNVLYISTQKRRM
: . ::::..... . .:
NP_001 GMVVIRGNSIIMLEALERV
50 60
>>NP_001304100 (OMIM: 603542) small nuclear ribonucleopr (58 aa)
initn: 136 init1: 117 opt: 118 Z-score: 192.6 bits: 39.4 E(85289): 0.00055
Smith-Waterman score: 118; 29.8% identity (73.7% similar) in 57 aa overlap (22-78:1-57)
10 20 30 40 50 60
pF1KB6 MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
.:::.: .:.: .: .::..... :.... .:.
NP_001 MKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNI
10 20 30
70 80
pF1KB6 GDAFIRGNNVLYISTQKRRM
: . ::::..... . .:
NP_001 GMVVIRGNSIIMLEALERV
40 50
80 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:16:06 2016 done: Sat Nov 5 18:16:07 2016
Total Scan time: 3.780 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]