Result of FASTA (ccds) for
pFN21AB6928
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6928, 227 aa
1>>>pF1KB6928 227 - 227 aa - 227 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4121+/-0.000759; mu= 13.5442+/- 0.045
mean_var=68.6978+/-13.612, 0's: 0 Z-trim(108.5): 22 B-trim: 0 in 0/49
Lambda= 0.154740
statistics sampled from 10249 (10268) to 10249 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.315), width: 16
Scan time: 2.240
The best scores are: opt bits E(32554)
CCDS4548.1 PRL gene_id:5617|Hs108|chr6 ( 227) 1513 346.3 9.3e-96
CCDS11653.1 GH1 gene_id:2688|Hs108|chr17 ( 217) 270 68.8 3e-12
CCDS11649.1 CSH1 gene_id:1442|Hs108|chr17 ( 217) 249 64.1 7.8e-11
CCDS42369.1 CSH2 gene_id:1443|Hs108|chr17 ( 217) 249 64.1 7.8e-11
>>CCDS4548.1 PRL gene_id:5617|Hs108|chr6 (227 aa)
initn: 1513 init1: 1513 opt: 1513 Z-score: 1832.7 bits: 346.3 E(32554): 9.3e-96
Smith-Waterman score: 1513; 100.0% identity (100.0% similar) in 227 aa overlap (1-227:1-227)
10 20 30 40 50 60
pF1KB6 MNIKGSPWKGSLLLLLVSNLLLCQSVAPLPICPGGAARCQVTLRDLFDRAVVLSHYIHNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MNIKGSPWKGSLLLLLVSNLLLCQSVAPLPICPGGAARCQVTLRDLFDRAVVLSHYIHNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 SSEMFSEFDKRYTHGRGFITKAINSCHTSSLATPEDKEQAQQMNQKDFLSLIVSILRSWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SSEMFSEFDKRYTHGRGFITKAINSCHTSSLATPEDKEQAQQMNQKDFLSLIVSILRSWN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 EPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEGMELIVSQVHPETKENEIYPVWSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEGMELIVSQVHPETKENEIYPVWSG
130 140 150 160 170 180
190 200 210 220
pF1KB6 LPSLQMADEESRLSAYYNLLHCLRRDSHKIDNYLKLLKCRIIHNNNC
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LPSLQMADEESRLSAYYNLLHCLRRDSHKIDNYLKLLKCRIIHNNNC
190 200 210 220
>>CCDS11653.1 GH1 gene_id:2688|Hs108|chr17 (217 aa)
initn: 186 init1: 102 opt: 270 Z-score: 333.3 bits: 68.8 E(32554): 3e-12
Smith-Waterman score: 270; 25.4% identity (60.7% similar) in 224 aa overlap (10-227:4-215)
10 20 30 40 50 60
pF1KB6 MNIKGSPWKGSLLLLLVSNLLLCQSVAPLPICPGGAARCQVTLRDLFDRAVVLSHYIHNL
:: ::.. ::: :: :.: . : ::: :.. .: .:.:
CCDS11 MATGSRTSLLLAFGLLC-----LPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQL
10 20 30 40
70 80 90 100 110
pF1KB6 SSEMFSEFDKRYT---HGRGFITKAINS-CHTSSLATPEDKEQAQQMNQKDFLSLIVSIL
. . ..::.. : . .:. . .: : . :. :: ..:..:: .. ..: . . ..
CCDS11 AFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 RSWNEPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEGMELIVSQVHPET-KENEIY
.:: ::. : :.. . .. .. . : : ::.. ...... . . ..:.
CCDS11 QSWLEPVQFL----RSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIF
110 120 130 140 150 160
180 190 200 210 220
pF1KB6 P-VWSGLPSLQMADEESRLSAYYNLLHCLRRDSHKIDNYLKLLKCRIIHNNNC
..: . . . :. : :.::.:.:.: :....:....:: .... :
CCDS11 KQTYSKFDTNSHNDDA--LLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGS-CGF
170 180 190 200 210
>>CCDS11649.1 CSH1 gene_id:1442|Hs108|chr17 (217 aa)
initn: 174 init1: 96 opt: 249 Z-score: 307.9 bits: 64.1 E(32554): 7.8e-11
Smith-Waterman score: 249; 25.0% identity (60.3% similar) in 224 aa overlap (10-227:4-215)
10 20 30 40 50 60
pF1KB6 MNIKGSPWKGSLLLLLVSNLLLCQSVAPLPICPGGAARCQVTLRDLFDRAVVLSHYIHNL
:: ::.. ::: :: ..: : : :::.:.. .: :.:
CCDS11 MAPGSRTSLLLAFALLC-----LPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQL
10 20 30 40
70 80 90 100 110
pF1KB6 SSEMFSEFDKRYT---HGRGFITKAINS-CHTSSLATPEDKEQAQQMNQKDFLSLIVSIL
. . ..::.. : . .:. . .: : ..:. :: . :..:: .. ..: . . ..
CCDS11 AIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 RSWNEPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEGMELIVSQVHPETKENE--I
.:: ::. : :.: . .. . . : : ::.. ...... .... .
CCDS11 ESWLEPVRFL----RSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQIL
110 120 130 140 150 160
180 190 200 210 220
pF1KB6 YPVWSGLPSLQMADEESRLSAYYNLLHCLRRDSHKIDNYLKLLKCRIIHNNNC
..: . . . ... : :.::.:.:.: :....:....:: .... :
CCDS11 KQTYSKFDT--NSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGS-CGF
170 180 190 200 210
>>CCDS42369.1 CSH2 gene_id:1443|Hs108|chr17 (217 aa)
initn: 174 init1: 96 opt: 249 Z-score: 307.9 bits: 64.1 E(32554): 7.8e-11
Smith-Waterman score: 249; 25.0% identity (60.3% similar) in 224 aa overlap (10-227:4-215)
10 20 30 40 50 60
pF1KB6 MNIKGSPWKGSLLLLLVSNLLLCQSVAPLPICPGGAARCQVTLRDLFDRAVVLSHYIHNL
:: ::.. ::: :: ..: : : :::.:.. .: :.:
CCDS42 MAAGSRTSLLLAFALLC-----LPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQL
10 20 30 40
70 80 90 100 110
pF1KB6 SSEMFSEFDKRYT---HGRGFITKAINS-CHTSSLATPEDKEQAQQMNQKDFLSLIVSIL
. . ..::.. : . .:. . .: : ..:. :: . :..:: .. ..: . . ..
CCDS42 AIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB6 RSWNEPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLEGMELIVSQVHPETKENE--I
.:: ::. : :.: . .. . . : : ::.. ...... .... .
CCDS42 ESWLEPVRFL----RSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQIL
110 120 130 140 150 160
180 190 200 210 220
pF1KB6 YPVWSGLPSLQMADEESRLSAYYNLLHCLRRDSHKIDNYLKLLKCRIIHNNNC
..: . . . ... : :.::.:.:.: :....:....:: .... :
CCDS42 KQTYSKFDT--NSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGS-CGF
170 180 190 200 210
227 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:44:54 2016 done: Sat Nov 5 02:44:54 2016
Total Scan time: 2.240 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]