FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6711, 79 aa
  1>>>pF1KB6711 79 - 79 aa - 79 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.0137+/-0.000247; mu= 14.6009+/- 0.015
 mean_var=47.4111+/- 9.451, 0's: 0 Z-trim(120.7): 9  B-trim: 87 in 1/55
 Lambda= 0.186266
 statistics sampled from 36234 (36243) to 36234 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.425), width:  16
 Scan time:  3.680

The best scores are:                                      opt bits E(85289)
NP_001817 (OMIM: 116900) cyclin-dependent kinases  (  79)  561 156.8 3.4e-39
NP_001818 (OMIM: 116901) cyclin-dependent kinases  (  79)  466 131.3 1.6e-31


>>NP_001817 (OMIM: 116900) cyclin-dependent kinases regu  (79 aa)
 initn: 561 init1: 561 opt: 561  Z-score: 824.7  bits: 156.8 E(85289): 3.4e-39
Smith-Waterman score: 561; 100.0% identity (100.0% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KB6 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH
               10        20        30        40        50        60

               70         
pF1KB6 EPEPHILLFRRPLPKKPKK
       :::::::::::::::::::
NP_001 EPEPHILLFRRPLPKKPKK
               70         

>>NP_001818 (OMIM: 116901) cyclin-dependent kinases regu  (79 aa)
 initn: 469 init1: 458 opt: 466  Z-score: 686.8  bits: 131.3 E(85289): 1.6e-31
Smith-Waterman score: 466; 81.0% identity (91.1% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KB6 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH
       :.:::::::::: ::..::::::::....: ::::::::: ::: :::::: ::::::::
NP_001 MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH
               10        20        30        40        50        60

               70         
pF1KB6 EPEPHILLFRRPLPKKPKK
       :::::::::::::::  .:
NP_001 EPEPHILLFRRPLPKDQQK
               70         




79 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:19:32 2016 done: Mon Nov  7 01:19:33 2016
 Total Scan time:  3.680 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]