FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4523, 563 aa
  1>>>pF1KE4523 563 - 563 aa - 563 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9914+/-0.000337; mu= 15.3140+/- 0.021
 mean_var=81.3868+/-16.619, 0's: 0 Z-trim(116.7): 49  B-trim: 754 in 1/51
 Lambda= 0.142166
 statistics sampled from 28074 (28121) to 28074 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.33), width:  16
 Scan time: 11.000

The best scores are:                                      opt bits E(85289)
NP_000382 (OMIM: 204500,607998) tripeptidyl-peptid ( 563) 3849 799.2       0


>>NP_000382 (OMIM: 204500,607998) tripeptidyl-peptidase   (563 aa)
 initn: 3849 init1: 3849 opt: 3849  Z-score: 4266.1  bits: 799.2 E(85289):    0
Smith-Waterman score: 3849; 99.8% identity (100.0% similar) in 563 aa overlap (1-563:1-563)

               10        20        30        40        50        60
pF1KE4 MGLQACLLGLFALILSGKCSYSPEPDQRRTLPPGWVSLGRADPEEELSLTFALRQQNVER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGLQACLLGLFALILSGKCSYSPEPDQRRTLPPGWVSLGRADPEEELSLTFALRQQNVER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTVQKWLLAAGAQKCHSVITQDFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTVQKWLLAAGAQKCHSVITQDFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 TCWLSIRQAELLLPGAEFHHYVGGPTETHVVRSPHPYQLPQALAPHVDFVGGLHRFPPTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TCWLSIRQAELLLPGAEFHHYVGGPTETHVVRSPHPYQLPQALAPHVDFVGGLHRFPPTS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 SLRQRPEPQVTGTVGLHLGVTPSVIRKRYNLTSQDVGSGTSNNSQACAQFLEQYFHDSDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SLRQRPEPQVTGTVGLHLGVTPSVIRKRYNLTSQDVGSGTSNNSQACAQFLEQYFHDSDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 AQFMRLFGGNFAHQASVARVVGQQGRGRAGIEASLDVQYLMSAGANISTWVYSSPGRHEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 AQFMRLFGGNFAHQASVARVVGQQGRGRAGIEASLDVQYLMSAGANISTWVYSSPGRHEG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 QEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 SGAGCWSVSGRHEFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRPS
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRPS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 YQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 FGGILSLINEHRILSGRPPLGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 FGGILSLINEHRILSGRPPLGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGP
              490       500       510       520       530       540

              550       560   
pF1KE4 GWDPVTGWGTPNFPALLKTLLNP
       :::::::::::::::::::::::
NP_000 GWDPVTGWGTPNFPALLKTLLNP
              550       560   




563 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:15:34 2016 done: Sun Nov  6 00:15:35 2016
 Total Scan time: 11.000 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]