FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4523, 563 aa 1>>>pF1KE4523 563 - 563 aa - 563 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0952+/-0.000747; mu= 14.5995+/- 0.045 mean_var=74.2533+/-14.905, 0's: 0 Z-trim(109.6): 25 B-trim: 0 in 0/51 Lambda= 0.148839 statistics sampled from 10958 (10969) to 10958 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.337), width: 16 Scan time: 3.190 The best scores are: opt bits E(32554) CCDS7770.1 TPP1 gene_id:1200|Hs108|chr11 ( 563) 3849 835.7 0 >>CCDS7770.1 TPP1 gene_id:1200|Hs108|chr11 (563 aa) initn: 3849 init1: 3849 opt: 3849 Z-score: 4463.5 bits: 835.7 E(32554): 0 Smith-Waterman score: 3849; 99.8% identity (100.0% similar) in 563 aa overlap (1-563:1-563) 10 20 30 40 50 60 pF1KE4 MGLQACLLGLFALILSGKCSYSPEPDQRRTLPPGWVSLGRADPEEELSLTFALRQQNVER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MGLQACLLGLFALILSGKCSYSPEPDQRRTLPPGWVSLGRADPEEELSLTFALRQQNVER 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 LSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTVQKWLLAAGAQKCHSVITQDFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 LSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTVQKWLLAAGAQKCHSVITQDFL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 TCWLSIRQAELLLPGAEFHHYVGGPTETHVVRSPHPYQLPQALAPHVDFVGGLHRFPPTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 TCWLSIRQAELLLPGAEFHHYVGGPTETHVVRSPHPYQLPQALAPHVDFVGGLHRFPPTS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 SLRQRPEPQVTGTVGLHLGVTPSVIRKRYNLTSQDVGSGTSNNSQACAQFLEQYFHDSDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 SLRQRPEPQVTGTVGLHLGVTPSVIRKRYNLTSQDVGSGTSNNSQACAQFLEQYFHDSDL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 AQFMRLFGGNFAHQASVARVVGQQGRGRAGIEASLDVQYLMSAGANISTWVYSSPGRHEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 AQFMRLFGGNFAHQASVARVVGQQGRGRAGIEASLDVQYLMSAGANISTWVYSSPGRHEG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 QEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 QEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGD 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 SGAGCWSVSGRHEFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRPS ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 SGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRPS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 YQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 YQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPV 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 FGGILSLINEHRILSGRPPLGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 FGGILSLINEHRILSGRPPLGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGP 490 500 510 520 530 540 550 560 pF1KE4 GWDPVTGWGTPNFPALLKTLLNP ::::::::::::::::::::::: CCDS77 GWDPVTGWGTPNFPALLKTLLNP 550 560 563 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 00:15:33 2016 done: Sun Nov 6 00:15:33 2016 Total Scan time: 3.190 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]