(Circular) (Six-base) MAPSORT of: pFN21AE1346.seq Check: 4565 from: 1 to: 5470 pFN21AE1346 5470 bp With 182 enzymes: SgfI * August 16, 2010 14:45 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3280 278 Size: 53 83 186 936 1744 2468 Fragments arranged by size: 2468 1744 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2813 1937 Size: 876 4594 Acc65I G'GTAC_C Cuts at: 2791 2791 Size: 5470 AclI AA'CG_TT Cuts at: 1563 3597 3970 1563 Size: 2034 373 3063 Fragments arranged by size: 3063 2034 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2102 3533 4917 5185 1632 Size: 470 1431 1384 268 1917 Fragments arranged by size: 1917 1431 1384 470 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5273 AflIII A'CryG_T Cuts at: 1203 4369 5346 1203 Size: 3166 977 1327 Fragments arranged by size: 3166 1327 977 AgeI A'CCGG_T Cuts at: 4301 4301 Size: 5470 AhdI GACnn_n'nnGTC Cuts at: 4199 4199 Size: 5470 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5470 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2212 1184 Size: 1028 4442 AlwNI CAG_nnn'CTG Cuts at: 3213 4785 3213 Size: 1572 3898 ApaLI G'TGCA_C Cuts at: 2428 3527 4683 2428 Size: 1099 1156 3215 Fragments arranged by size: 3215 1156 1099 ApoI r'AATT_y Cuts at: 1493 2779 3005 3157 5266 1493 Size: 1286 226 152 2109 1697 Fragments arranged by size: 2109 1697 1286 226 152 AseI AT'TA_AT Cuts at: 160 1032 4024 160 Size: 872 2992 1606 Fragments arranged by size: 2992 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5470 AvaI C'yCGr_G Cuts at: 1870 1943 2417 2795 1870 Size: 73 474 378 4545 Fragments arranged by size: 4545 474 378 73 BamHI G'GATC_C Cuts at: 2800 3167 2800 Size: 367 5103 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2228 2791 4246 618 Size: 325 217 627 441 563 1455 1842 Fragments arranged by size: 1842 1455 627 563 441 325 217 BanII G_rGCy'C Cuts at: 1391 2401 2789 1391 Size: 1010 388 4072 Fragments arranged by size: 4072 1010 388 BbeI G_GCGC'C Cuts at: 2232 2232 Size: 5470 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2178 2677 928 Size: 971 279 499 3721 Fragments arranged by size: 3721 971 499 279 BbvCI CC'TCA_GC Cuts at: 2052 2052 Size: 5470 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3661 3695 1903 Size: 34 50 34 1640 34 3678 Fragments arranged by size: 3678 1640 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3362 4572 3362 Size: 1210 4260 BclI T'GATC_A Cuts at: 1548 1548 Size: 5470 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4081 136 Size: 107 122 71 631 605 2409 1525 Fragments arranged by size: 2409 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5465 5465 Size: 5470 BlpI GC'TnA_GC Cuts at: 2345 2887 2345 Size: 542 4928 Bme1580I G_kGCm'C Cuts at: 1790 2432 3531 4687 1790 Size: 642 1099 1156 2573 Fragments arranged by size: 2573 1156 1099 642 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5470 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2055 2375 3201 Size: 416 53 83 399 24 638 320 826 Cuts at: 3201 4159 442 Size: 958 1753 Fragments arranged by size: 1753 958 826 638 416 399 320 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5470 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2661 4130 1239 Size: 1422 1469 2579 Fragments arranged by size: 2579 1469 1422 Bpu10I CC'TnA_GC Cuts at: 2052 2052 Size: 5470 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2683 3595 4460 4758 2683 Size: 912 865 298 3395 Fragments arranged by size: 3395 912 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2407 2701 2753 4133 882 Size: 617 908 294 52 1380 2219 Fragments arranged by size: 2219 1380 908 617 294 52 BsaAI yAC'GTr Cuts at: 493 1204 3261 493 Size: 711 2057 2702 Fragments arranged by size: 2702 2057 711 BsaBI GATnn'nnATC Cuts at: 5464 5464 Size: 5470 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2229 3277 3659 4294 Size: 53 83 186 936 696 1048 382 635 Cuts at: 4294 275 Size: 1451 Fragments arranged by size: 1451 1048 936 696 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2606 3903 4301 4575 4722 5133 2606 Size: 1297 398 274 147 411 2943 Fragments arranged by size: 2943 1297 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5245 Fragments arranged by size: 5245 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2476 1186 Size: 1290 4180 BseYI C'CCAG_C Cuts at: 2199 2259 2442 4673 5169 2199 Size: 60 183 2231 496 2500 Fragments arranged by size: 2500 2231 496 183 60 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2510 2522 1163 Size: 573 774 12 4111 Fragments arranged by size: 4111 774 573 12 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2920 3681 4709 1540 Size: 275 186 919 761 1028 2301 Fragments arranged by size: 2301 1028 919 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2432 3531 3616 4687 2432 Size: 1099 85 1071 3215 Fragments arranged by size: 3215 1099 1071 85 BsmI GAATG_Cn' Cuts at: 2981 3074 2981 Size: 93 5377 BsmBI CGTCTCn'nnnn_ Cuts at: 2239 2653 2239 Size: 414 5056 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2401 2432 2789 3531 3616 4687 1391 Size: 399 611 31 357 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 611 399 357 85 31 BspEI T'CCGG_A Cuts at: 2606 5133 2606 Size: 2527 2943 BspHI T'CATG_A Cuts at: 3359 5089 3359 Size: 1730 3740 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2126 2825 844 Size: 1282 699 3489 Fragments arranged by size: 3489 1282 699 BsrBI CCG'CTC Cuts at: 1394 1823 3357 1394 Size: 429 1534 3507 Fragments arranged by size: 3507 1534 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2194 3965 4139 65 Size: 1183 946 1771 174 1396 Fragments arranged by size: 1771 1396 1183 946 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2438 2571 4114 4301 1700 Size: 110 628 133 1543 187 2869 Fragments arranged by size: 2869 1543 628 187 133 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5470 BssHII G'CGCG_C Cuts at: 1925 2276 1925 Size: 351 5119 BssSI C'ACGA_G Cuts at: 3530 4542 3530 Size: 1012 4458 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5470 BstBI TT'CG_AA Cuts at: 4274 4274 Size: 5470 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5470 BstYI r'GATC_y Cuts at: 1972 2121 2800 3167 3552 3569 5021 5107 5119 Size: 149 679 367 385 17 1452 86 12 Cuts at: 5119 5465 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 679 385 367 346 149 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2638 513 Size: 552 1573 3345 Fragments arranged by size: 3345 1573 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4731 Fragments arranged by size: 4731 683 56 BtsI GCAGTG_nn' Cuts at: 2271 2522 2986 3780 3800 2271 Size: 251 464 794 20 3941 Fragments arranged by size: 3941 794 464 251 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5470 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5435 DraI TTT'AAA Cuts at: 2774 2774 Size: 5470 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4477 809 Size: 507 3161 1802 Fragments arranged by size: 3161 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2436 2917 3806 Size: 54 1425 50 275 18 606 481 889 Cuts at: 3806 5435 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 606 481 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2917 1537 Size: 275 1105 4090 Fragments arranged by size: 4090 1105 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2347 3400 1353 Size: 994 1053 3423 Fragments arranged by size: 3423 1053 994 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2279 4057 4431 4577 387 Size: 1064 138 690 1778 374 146 1280 Fragments arranged by size: 1778 1280 1064 690 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2102 2661 3533 4130 4917 5185 1239 Size: 393 470 559 872 597 787 268 1524 Fragments arranged by size: 1524 872 787 597 559 470 393 268 EcoNI CCTnn'n_nnAGG Cuts at: 2716 2716 Size: 5470 EcoO109I rG'GnC_Cy Cuts at: 2088 2612 2088 Size: 524 4946 EcoRI G'AATT_C Cuts at: 2779 3157 2779 Size: 378 5092 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2608 2608 Size: 5470 FspI TGC'GCA Cuts at: 3976 3976 Size: 5470 HaeII r_GCGC'y Cuts at: 1678 2232 4617 1678 Size: 554 2385 2531 Fragments arranged by size: 2531 2385 554 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2113 2145 2176 2208 4111 Size: 32 135 32 541 32 31 32 1903 Cuts at: 4111 4143 4185 4217 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1903 541 135 42 32 32 32 32 32 32 31 HincII GTy'rAC Cuts at: 669 1657 1938 2814 3060 669 Size: 988 281 876 246 3079 Fragments arranged by size: 3079 988 876 281 246 HindIII A'AGCT_T Cuts at: 748 2734 748 Size: 1986 3484 HpaI GTT'AAC Cuts at: 3060 3060 Size: 5470 KasI G'GCGC_C Cuts at: 2228 2228 Size: 5470 KpnI G_GTAC'C Cuts at: 2795 2795 Size: 5470 MfeI C'AATT_G Cuts at: 3069 3069 Size: 5470 MluI A'CGCG_T Cuts at: 5346 5346 Size: 5470 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4584 4768 1305 Size: 3279 184 2007 Fragments arranged by size: 3279 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3648 Fragments arranged by size: 3648 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3428 3787 3946 518 Size: 648 2262 359 159 2042 Fragments arranged by size: 2262 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2311 2344 2494 2886 3563 4711 4956 1606 Size: 705 33 150 392 677 1148 245 2120 Fragments arranged by size: 2120 1148 705 677 392 245 150 33 NaeI GCC'GGC Cuts at: 2440 2440 Size: 5470 NarI GG'CG_CC Cuts at: 2229 2229 Size: 5470 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4918 NdeI CA'TA_TG Cuts at: 387 387 Size: 5470 NgoMIV G'CCGG_C Cuts at: 2438 2438 Size: 5470 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5470 NotI GC'GGCC_GC Cuts at: 2917 2917 Size: 5470 NspI r_CATG'y Cuts at: 1132 1229 2828 4373 1132 Size: 97 1599 1545 2229 Fragments arranged by size: 2229 1599 1545 97 PasI CC'CwG_GG Cuts at: 1348 2224 1348 Size: 876 4594 PciI A'CATG_T Cuts at: 4369 4369 Size: 5470 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5470 PmeI GTTT'AAAC Cuts at: 2774 2774 Size: 5470 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3539 3571 5052 5084 3539 Size: 32 1481 32 3925 Fragments arranged by size: 3925 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5470 PsiI TTA'TAA Cuts at: 3040 3040 Size: 5470 PstI C_TGCA'G Cuts at: 830 2822 830 Size: 1992 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5470 PvuII CAG'CTG Cuts at: 2344 2494 2344 Size: 150 5320 SalI G'TCGA_C Cuts at: 1936 2812 1936 Size: 876 4594 SbfI CC_TGCA'GG Cuts at: 2822 2822 Size: 5470 ScaI AGT'ACT Cuts at: 3718 5430 3718 Size: 1712 3758 SfcI C'TryA_G Cuts at: 826 1045 2818 3953 4634 4825 826 Size: 219 1773 1135 681 191 1471 Fragments arranged by size: 1773 1471 1135 681 219 191 SfoI GGC'GCC Cuts at: 2230 2230 Size: 5470 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5470 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5470 SmaI CCC'GGG Cuts at: 1872 2419 2797 1872 Size: 547 378 4545 Fragments arranged by size: 4545 547 378 SmlI C'TyrA_G Cuts at: 820 1017 1943 2698 3574 4475 4737 820 Size: 197 926 755 876 901 262 1553 Fragments arranged by size: 1553 926 901 876 755 262 197 SnaBI TAC'GTA Cuts at: 493 3261 493 Size: 2768 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5470 SphI G_CATG'C Cuts at: 1132 2828 1132 Size: 1696 3774 SspI AAT'ATT Cuts at: 5 52 3394 5 Size: 47 3342 2081 Fragments arranged by size: 3342 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5470 StyI C'CwwG_G Cuts at: 513 1065 2909 513 Size: 552 1844 3074 Fragments arranged by size: 3074 1844 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2273 3497 3514 3667 3852 4297 325 Size: 1255 693 1224 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1224 693 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3716 5428 96 Size: 274 80 33 51 1443 1739 1712 138 Fragments arranged by size: 1739 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2501 2533 5430 5462 2501 Size: 32 2897 32 2509 Fragments arranged by size: 2897 2509 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5470 XbaI T'CTAG_A Cuts at: 2806 2806 Size: 5470 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5470 XmaI C'CCGG_G Cuts at: 1870 2417 2795 1870 Size: 547 378 4545 Fragments arranged by size: 4545 547 378 XmnI GAAnn'nnTTC Cuts at: 3599 3599 Size: 5470 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3278 276 Size: 53 83 186 936 1744 2468 Fragments arranged by size: 2468 1744 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BfrBI BplI BsiWI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoRV FseI FspAI NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SrfI SwaI XcmI