FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1381, 783 aa 1>>>pF1KE1381 783 - 783 aa - 783 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.0497+/-0.000862; mu= -0.4705+/- 0.052 mean_var=236.2557+/-47.946, 0's: 0 Z-trim(114.9): 13 B-trim: 229 in 1/51 Lambda= 0.083442 statistics sampled from 15416 (15423) to 15416 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.474), width: 16 Scan time: 5.380 The best scores are: opt bits E(32554) CCDS31614.1 RIN1 gene_id:9610|Hs108|chr11 ( 783) 5234 643.2 4.7e-184 CCDS56182.1 RIN2 gene_id:54453|Hs108|chr20 ( 944) 715 99.2 3.2e-20 >>CCDS31614.1 RIN1 gene_id:9610|Hs108|chr11 (783 aa) initn: 5234 init1: 5234 opt: 5234 Z-score: 3417.8 bits: 643.2 E(32554): 4.7e-184 Smith-Waterman score: 5234; 100.0% identity (100.0% similar) in 783 aa overlap (1-783:1-783) 10 20 30 40 50 60 pF1KE1 MESPGESGAGSPGAPSPSSFTTGHLAREKPAQDPLYDVPNASGGQAGGPQRPGRVVSLRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MESPGESGAGSPGAPSPSSFTTGHLAREKPAQDPLYDVPNASGGQAGGPQRPGRVVSLRE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 RLLLTRPVWLQLQANAAAALHMLRTEPPGTFLVRKSNTRQCQALCMRLPEASGPSFVSSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 RLLLTRPVWLQLQANAAAALHMLRTEPPGTFLVRKSNTRQCQALCMRLPEASGPSFVSSH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 YILESPGGVSLEGSELMFPDLVQLICAYCHTRDILLLPLQLPRAIHHAATHKELEAISHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 YILESPGGVSLEGSELMFPDLVQLICAYCHTRDILLLPLQLPRAIHHAATHKELEAISHL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 GIEFWSSSLNIKAQRGPAGGPVLPQLKARSPQELDQGTGAALCFFNPLFPGDLGPTKREK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 GIEFWSSSLNIKAQRGPAGGPVLPQLKARSPQELDQGTGAALCFFNPLFPGDLGPTKREK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 FKRSFKVRVSTETSSPLSPPAVPPPPVPVLPGAVPSQTERLPPCQLLRRESSVGYRVPAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 FKRSFKVRVSTETSSPLSPPAVPPPPVPVLPGAVPSQTERLPPCQLLRRESSVGYRVPAG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 SGPSLPPMPSLQEVDCGSPSSSEEEGVPGSRGSPATSPHLGRRRPLLRSMSAAFCSLLAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 SGPSLPPMPSLQEVDCGSPSSSEEEGVPGSRGSPATSPHLGRRRPLLRSMSAAFCSLLAP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 ERQVGRAAAALMQDRHTAAGQLVQDLLTQVRAGPEPQELQGIRQALSRARAMLSAELGPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 ERQVGRAAAALMQDRHTAAGQLVQDLLTQVRAGPEPQELQGIRQALSRARAMLSAELGPE 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 KLLSPKRLEHVLEKSLHCSVLKPLRPILAARLRRRLAADGSLGRLAEGLRLARAQGPGAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 KLLSPKRLEHVLEKSLHCSVLKPLRPILAARLRRRLAADGSLGRLAEGLRLARAQGPGAF 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE1 GSHLSLPSPVELEQVRQKLLQLLRTYSPSAQVKRLLQACKLLYMALRTQEGEGAGADEFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 GSHLSLPSPVELEQVRQKLLQLLRTYSPSAQVKRLLQACKLLYMALRTQEGEGAGADEFL 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE1 PLLSLVLAHCDLPELLLEAEYMSELLEPSLLTGEGGYYLTSLSASLALLSGLGQAHTLPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 PLLSLVLAHCDLPELLLEAEYMSELLEPSLLTGEGGYYLTSLSASLALLSGLGQAHTLPL 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE1 SPVQELRRSLSLWEQRRLPATHCFQHLLRVAYQDPSSGCTSKTLAVPPEASIATLNQLCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 SPVQELRRSLSLWEQRRLPATHCFQHLLRVAYQDPSSGCTSKTLAVPPEASIATLNQLCA 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE1 TKFRVTQPNTFGLFLYKEQGYHRLPPGALAHRLPTTGYLVYRRAEWPETQGAVTEEEGSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 TKFRVTQPNTFGLFLYKEQGYHRLPPGALAHRLPTTGYLVYRRAEWPETQGAVTEEEGSG 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE1 QSEARSRGEEQGCQGDGDAGVKASPRDIREQSETTAEGGQGQAQEGPAQPGEPEAEGSRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 QSEARSRGEEQGCQGDGDAGVKASPRDIREQSETTAEGGQGQAQEGPAQPGEPEAEGSRA 730 740 750 760 770 780 pF1KE1 AEE ::: CCDS31 AEE >>CCDS56182.1 RIN2 gene_id:54453|Hs108|chr20 (944 aa) initn: 1094 init1: 460 opt: 715 Z-score: 476.5 bits: 99.2 E(32554): 3.2e-20 Smith-Waterman score: 985; 31.8% identity (54.9% similar) in 758 aa overlap (100-703:177-924) 70 80 90 100 110 120 pF1KE1 LQLQANAAAALHMLRTEPPGTFLVRKSNTRQCQALCMRLPEASGPSFVSSHYILESPGGV : ..: .::: : . . : :: CCDS56 LQLSLSEEEAAEVLQAQPPGIFLVHKSTKMQKKVLSLRLPCEFGAPL-KEFAIKESTYTF 150 160 170 180 190 200 130 140 150 160 170 180 pF1KE1 SLEGSELMFPDLVQLICAYCHTRDILLLPLQLPRAIHHAATHKELEAISHLGIEFWSSSL ::::: . : :: .:: :: .::.: . :.:: :: : .. .:: ....:..:::: CCDS56 SLEGSGISFADLFRLIAFYCISRDVLPFTLKLPYAISTAKSEAQLEELAQMGLNFWSSPA 210 220 230 240 250 260 190 200 210 220 pF1KE1 NIKAQRGP------AGGPVLP----QL---------KARSPQELD-QGTGAALCFFNPLF . : : .. : : :: :.:.:.::. . :..::::.:::: CCDS56 DSKPPNLPPPHRPLSSDGVCPASLRQLCLINGVHSIKTRTPSELECSQTNGALCFINPLF 270 280 290 300 310 320 230 240 250 260 pF1KE1 ----PGDL-GPTKREKFKRSFKVRVSTETSSPLSPPAVPPPPV------P---------- :: : :: . :. .. . .: :: :: ::: . : CCDS56 LKVHSQDLSGGLKRPS-TRTPNANGTERTRSP--PPRPPPPAINSLHTSPRLARTETQTS 330 340 350 360 370 380 270 280 290 300 310 pF1KE1 -------------VLPGAVPSQTERLPPCQLLRRESSV----GYRVPAGSGPSLPPMPSL .:::. :. .:: .: .. : . : .. .:. :. : : CCDS56 MPETVNHNKHGNVALPGTKPTP---IPPPRLKKQASFLEAEGGAKTLSGGRPGAG--PEL 390 400 410 420 430 320 330 340 pF1KE1 QEVDCGSPSSSEEEGVPG--SRGSPATS---P--HLGRRR-------------------- . :::... :..:: .:. : .: : : ::.: CCDS56 ELGTAGSPGGAPPEAAPGDCTRAPPPSSESRPPCHGGRQRLSDMSISTSSSDSLEFDRSM 440 450 460 470 480 490 350 pF1KE1 PL----------------------------------------------LRSMSAAFCSLL :: :...:..: :.. CCDS56 PLFGYEADTNSSLEDYEGESDQETMAPPIKSKKKRSSSFVLPKLVKSQLQKVSGVFSSFM 500 510 520 530 540 550 360 370 380 390 400 410 pF1KE1 APERQVGRAAAALMQDRHTAAGQLVQDLLTQVRAGPE-----PQELQGIRQALSRARAML .::... : : : .:. : : :::: .. .. . : . :: ::: ..... .: CCDS56 TPEKRMVRRIAELSRDKCTYFGCLVQDYVSFLQENKECHVSSTDMLQTIRQFMTQVKNYL 560 570 580 590 600 610 420 430 440 450 460 pF1KE1 S--AELGP--EKLLSPKRLEHVLEKSLHCSVLKPLRPILAARLRRRLAADGSLGRLAEGL : .:: : :.:. ... ::::..: .::::. . : :. :::: .: :.: CCDS56 SQSSELDPPIESLIPEDQIDVVLEKAMHKCILKPLKGHVEAMLKDFHMADGSWKQLKENL 620 630 640 650 660 670 470 480 490 500 510 520 pF1KE1 RLARAQGPGAFGSHLSLPSPVELEQVRQKLLQLLRTYSPSAQVKRLLQACKLLYMALRTQ .:.: ..: .: :. :..:... :.. . . ::: .: ::..:::.: ..... CCDS56 QLVRQRNPQELGVFAPTPDFVDVEKIKVKFMTMQKMYSPEKKVMLLLRVCKLIYTVMENN 680 690 700 710 720 730 530 540 550 560 570 580 pF1KE1 EGEGAGADEFLPLLSLVLAHCDLPELLLEAEYMSELLEPSLLTGEGGYYLTSLSASLALL :. :::.:::.:. :.:.::. :: : ::: :::.:::: ::::::::: ..:.:. CCDS56 SGRMYGADDFLPVLTYVIAQCDMLELDTEIEYMMELLDPSLLHGEGGYYLTSAYGALSLI 740 750 760 770 780 790 590 600 610 620 630 640 pF1KE1 SGLGQAHTLPLSPVQELRRSLSLWEQRR-----LPATHCFQHLLRVAYQDPSSGCTSKTL ... . .. : .: : .: :..:: .:.. ::. ::::.:. .::::.::: CCDS56 KNFQEEQAARLLS-SETRDTLRQWHKRRTTNRTIPSVDDFQNYLRVAFQEVNSGCTGKTL 800 810 820 830 840 850 650 660 670 680 690 pF1KE1 AVPPEASIATLNQLCATKFRVTQPNTFGLFLYKEQGYHRLPPGALAHRL---------PT : : . . :.:: ::.: .:. ..:::. .. ...: . ... : CCDS56 LVRPYITTEDVCQICAEKFKVGDPEEYSLFLFVDETWQQLAEDTYPQKIKAELHSRPQPH 860 870 880 890 900 910 700 710 720 730 740 750 pF1KE1 TGYLVYRRAEWPETQGAVTEEEGSGQSEARSRGEEQGCQGDGDAGVKASPRDIREQSETT ..::.: CCDS56 IFHFVYKRIKNDPYGIIFQNGEEDLTTS 920 930 940 783 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:25:39 2016 done: Mon Nov 7 01:25:40 2016 Total Scan time: 5.380 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]